Feature identity
- Identifier
- PaHa12g04420.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 771 bp
- Genomic location
- 12:22,216,245–22,217,604
- Strand
- −
Hass · mRNA
PaHa12g04420.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 771
- bp
- 12:22,216,245–22,217,604
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa12g04420
- eggNOG
- Preferred name: LOC104589418 | Seed ortholog: 337451.A0A3S3NKR8 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@33090|FSl-38, Myb_DNA-binding@3398|UUF-51, Myb_DNA-binding@35493|KPq-43
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009611 response to wounding; GO:0009800 cinnamic acid biosynthetic process; GO:1990641 response to iron ion starvation
- KEGG
- KO: K09422 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa12g04420.1-protein
derives_frommRNAPaHa12g04420.1
mRNAPaHa12g04420.1
part_ofgenePaHa12g04420
CDS
part_ofPaHa12g04420.1-CDS-12-1787993825:22216245..22216752mRNAPaHa12g04420.1
CDS
part_ofPaHa12g04420.1-CDS-12-1787993825:22216908..22217037mRNAPaHa12g04420.1
CDS
part_ofPaHa12g04420.1-CDS-12-1787993825:22217472..22217604mRNAPaHa12g04420.1
exon
part_ofPaHa12g04420.1-exon-12-1787993825:22216245..22216752mRNAPaHa12g04420.1
exon
part_ofPaHa12g04420.1-exon-12-1787993825:22216908..22217037mRNAPaHa12g04420.1
exon
part_ofPaHa12g04420.1-exon-12-1787993825:22217472..22217604mRNAPaHa12g04420.1
