Hass · mRNA

PaHa12g05430.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

363
bp
12:25,508,078–25,519,129
genomic location
Record overview

Feature identity

Identifier
PaHa12g05430.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
363 bp
Genomic location
12:25,508,078–25,519,129
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: rpa49 | Seed ortholog: 337451.A0A3S3P9Z8 | COG: S | eggNOG OG: RNA_pol_I_A49@2759|A-1
Gene Ontology
GO:0001179 RNA polymerase I general transcription initiation factor binding; GO:0001188 RNA polymerase I preinitiation complex assembly; GO:0001650 fibrillar center; GO:0003677 DNA binding; GO:0003899 DNA-directed RNA polymerase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005736 RNA polymerase I complex; GO:0006360 transcription by RNA polymerase I; GO:0006361 transcription initiation at RNA polymerase I promoter; GO:0006362 transcription elongation by RNA polymerase I; GO:0006363 termination of RNA polymerase I transcription; GO:0008361 regulation of cell size; GO:0042790 nucleolar large rRNA transcription by RNA polymerase I
KEGG
KO: K03005 | Pathway: 03020 | BRITE: 00001, 01611, 03021
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa12g05430.1-CDS-12-1787993825:25508078..25508315
part_of
CDSPaHa12g05430.1-CDS-12-1787993825:25508399..25508473
part_of
CDSPaHa12g05430.1-CDS-12-1787993825:25519080..25519129
part_of
exonPaHa12g05430.1-exon-12-1787993825:25508078..25508315
part_of
exonPaHa12g05430.1-exon-12-1787993825:25508399..25508473
part_of
exonPaHa12g05430.1-exon-12-1787993825:25519080..25519129
part_of