Feature identity
- Identifier
- PaHa12g05440.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 318 bp
- Genomic location
- 12:25,519,161–25,535,008
- Strand
- +
Hass · mRNA
PaHa12g05440.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 318
- bp
- 12:25,519,161–25,535,008
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa12g05440
- eggNOG
- Preferred name: rpa49 | Seed ortholog: 337451.A0A443Q188 | COG: S | eggNOG OG: RNA_pol_I_A49@2759|A-1
- Gene Ontology
- GO:0001179 RNA polymerase I general transcription initiation factor binding; GO:0001188 RNA polymerase I preinitiation complex assembly; GO:0001650 fibrillar center; GO:0003677 DNA binding; GO:0003899 DNA-directed RNA polymerase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005736 RNA polymerase I complex; GO:0006360 transcription by RNA polymerase I; GO:0006361 transcription initiation at RNA polymerase I promoter; GO:0006362 transcription elongation by RNA polymerase I; GO:0006363 termination of RNA polymerase I transcription; GO:0008361 regulation of cell size; GO:0042790 nucleolar large rRNA transcription by RNA polymerase I
- KEGG
- KO: K03005 | Pathway: 03020 | BRITE: 00001, 01611, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa12g05440.1-protein
derives_frommRNAPaHa12g05440.1
mRNAPaHa12g05440.1
part_ofgenePaHa12g05440
CDS
part_ofPaHa12g05440.1-CDS-12-1787993825:25519161..25519208mRNAPaHa12g05440.1
CDS
part_ofPaHa12g05440.1-CDS-12-1787993825:25520522..25520645mRNAPaHa12g05440.1
CDS
part_ofPaHa12g05440.1-CDS-12-1787993825:25520721..25520854mRNAPaHa12g05440.1
CDS
part_ofPaHa12g05440.1-CDS-12-1787993825:25534997..25535008mRNAPaHa12g05440.1
exon
part_ofPaHa12g05440.1-exon-12-1787993825:25519161..25519208mRNAPaHa12g05440.1
exon
part_ofPaHa12g05440.1-exon-12-1787993825:25520522..25520645mRNAPaHa12g05440.1
exon
part_ofPaHa12g05440.1-exon-12-1787993825:25520721..25520854mRNAPaHa12g05440.1
exon
part_ofPaHa12g05440.1-exon-12-1787993825:25534997..25535008mRNAPaHa12g05440.1
