Feature identity
- Identifier
- PaHa12g08230.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 720 bp
- Genomic location
- 12:31,348,829–31,353,010
- Strand
- −
Hass · mRNA
PaHa12g08230.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 720
- bp
- 12:31,348,829–31,353,010
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa12g08230
- eggNOG
- Preferred name: BBX24 | Seed ortholog: 337451.A0A443Q1A9 | COG: S | eggNOG OG: zf-B_box@2759|B-2!, zf-B_box@33090|l-7, zf-B_box@35493|BH-10
- Gene Ontology
- GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003712 transcription coregulator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009416 response to light stimulus; GO:0010100 negative regulation of photomorphogenesis; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0048573 photoperiodism, flowering; GO:0090351 seedling development; GO:1902448 positive regulation of shade avoidance
- KEGG
- KO: K12135 | Pathway: 04712 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa12g08230.1-protein
derives_frommRNAPaHa12g08230.1
mRNAPaHa12g08230.1
part_ofgenePaHa12g08230
CDS
part_ofPaHa12g08230.1-CDS-12-1787993825:31348829..31349062mRNAPaHa12g08230.1
CDS
part_ofPaHa12g08230.1-CDS-12-1787993825:31349712..31350014mRNAPaHa12g08230.1
CDS
part_ofPaHa12g08230.1-CDS-12-1787993825:31352828..31353010mRNAPaHa12g08230.1
exon
part_ofPaHa12g08230.1-exon-12-1787993825:31348829..31349062mRNAPaHa12g08230.1
exon
part_ofPaHa12g08230.1-exon-12-1787993825:31349712..31350014mRNAPaHa12g08230.1
exon
part_ofPaHa12g08230.1-exon-12-1787993825:31352828..31353010mRNAPaHa12g08230.1
