Feature identity
- Identifier
- PaHa12g08990.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 4,251 bp
- Genomic location
- 12:33,118,210–33,137,383
- Strand
- −
Hass · mRNA
PaHa12g08990.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 4,251
- bp
- 12:33,118,210–33,137,383
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa12g08990
- eggNOG
- Preferred name: SYN4 | Seed ortholog: 337451.A0A443Q167 | COG: S | eggNOG OG: Rad21_Rec8@131567|AQ-7, Rad21_Rec8@33090|Ya-23, Rad21_Rec8_N@131567|A-1*, Rad21_Rec8_N@2759|Ae-8, Rad21_Rec8_N@33090|NW-16
- Gene Ontology
- GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003684 damaged DNA binding; GO:0003690 double-stranded DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006302 double-strand break repair; GO:0007062 sister chromatid cohesion; GO:0019901 protein kinase binding; GO:0043565 sequence-specific DNA binding; GO:0061776 ATP-dependent topological DNA co-entrapment activity; GO:0070601 centromeric sister chromatid cohesion; GO:0106222 lncRNA binding; GO:0140297 DNA-binding transcription factor binding
- KEGG
- KO: K06670 | Pathway: 04110, 04111, 04113 | BRITE: 00001, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa12g08990.1-protein
derives_frommRNAPaHa12g08990.1
mRNAPaHa12g08990.1
part_ofgenePaHa12g08990
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33118210..33118308mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33122418..33122547mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33122768..33122882mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33123591..33123624mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33125668..33126923mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33131740..33131876mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33132105..33132246mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33132433..33132834mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33132940..33134276mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33135375..33135439mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33136032..33136081mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33136193..33136290mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33136384..33136645mRNAPaHa12g08990.1
CDS
part_ofPaHa12g08990.1-CDS-12-1787993825:33137260..33137383mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33118210..33118308mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33122418..33122547mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33122768..33122882mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33123591..33123624mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33125668..33126923mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33131740..33131876mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33132105..33132246mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33132433..33132834mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33132940..33134276mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33135375..33135439mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33136032..33136081mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33136193..33136290mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33136384..33136645mRNAPaHa12g08990.1
exon
part_ofPaHa12g08990.1-exon-12-1787993825:33137260..33137383mRNAPaHa12g08990.1
