PaHa01g33950.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,752: bp
1:84,324,413–84,356,139: genomic location

Record overview

Feature identity

Identifier: PaHa01g33950.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 1,752 bp
Genomic location: 1:84,324,413–84,356,139
Strand: +

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa01g33950

eggNOG: Preferred name: LOC106777822 | Seed ortholog: 337451.A0A3S3N525 | COG: S | eggNOG OG: YTH@131567|A-1*, YTH@2759|AD-7
Gene Ontology: GO:0000381 regulation of alternative mRNA splicing, via spliceosome; GO:0000398 mRNA splicing, via spliceosome; GO:0001701 in utero embryonic development; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0004519 endonuclease activity; GO:0004521 RNA endonuclease activity; GO:0005515 protein binding; GO:0005516 calmodulin binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005847 mRNA cleavage and polyadenylation specificity factor complex; GO:0005886 plasma membrane; GO:0006376 mRNA splice site recognition; GO:0006396 RNA processing; GO:0006406 mRNA export from nucleus; GO:0006979 response to oxidative stress; GO:0007283 spermatogenesis; GO:0007530 sex determination; GO:0009048 dosage compensation by inactivation of X chromosome; GO:0010608 post-transcriptional regulation of gene expression; GO:0016604 nuclear body; GO:0016607 nuclear speck; GO:0031124 mRNA 3'-end processing; GO:0031440 regulation of mRNA 3'-end processing; GO:0034052 positive regulation of plant-type hypersensitive response; GO:0036002 pre-mRNA binding; GO:0043068 positive regulation of programmed cell death; GO:0048024 regulation of mRNA splicing, via spliceosome; GO:0048160 primary follicle stage; GO:0050873 brown fat cell differentiation; GO:0110104 mRNA alternative polyadenylation; GO:0140313 molecular sequestering activity; GO:1990247 N6-methyladenosine-containing RNA reader activity; GO:2000031 regulation of salicylic acid mediated signaling pathway
KEGG: KO: K20100 | Pathway: 03015 | BRITE: 00001, 03041

Biological context