Anise · gene

Chr03.g25980

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

83,519
bp
Chr03:56,188,498–56,272,016
genomic location
Record overview

Feature identity

Identifier
Chr03.g25980
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
83,519 bp
Genomic location
Chr03:56,188,498–56,272,016
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010259677.1,A,[Nuclear cap-binding protein subunit]
Gene Ontology
Nuclear cap-binding protein subunit | GO:0000003//reproduction; GO:0000184//nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; GO:0000375//RNA splicing, via transesterification reactions; GO:0000377//RNA splicing, via transesterification reactions with bulged adenosine as nucleophile; GO:0000394//RNA splicing, via endonucleolytic cleavage and ligation; GO:0000398//mRNA splicing, via spliceosome; GO:0000956//nuclear-transcribed mRNA catabolic process; GO:0001101//response to acid chemical; GO:0003006//developmental process involved in reproduction; GO:0006139//nucleobase-containing compound metabolic process; GO:0006396//RNA processing; GO:0006397//mRNA processing; GO:0006401//RNA catabolic process; GO:0006402//mRNA catabolic process; GO:0006403//RNA localization; GO:0006405//RNA export from nucleus; GO:0006406//mRNA export from nucleus; GO:0006611//protein export from nucleus; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006810//transport; GO:0006886//intracellular protein transport; GO:0006913//nucleocytoplasmic transport; GO:0007275//multicellular organism development; GO:0008104//protein localization; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0008380//RNA splicing; GO:0009056//catabolic process; GO:0009057//macromolecule catabolic process; GO:0009314//response to radiation; GO:0009416//response to light stimulus; GO:0009628//response to abiotic stimulus; GO:0009648//photoperiodism; GO:0009719//response to endogenous stimulus; GO:0009725//response to hormone; GO:0009737//response to abscisic acid; GO:0009791//post-embryonic development; GO:0009892//negative regulation of metabolic process; GO:0009987//cellular process; GO:0010033//response to organic substance; GO:0010228//vegetative to reproductive phase transition of meristem; GO:0010467//gene expression; GO:0010468//regulation of gene expression; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010608//posttranscriptional regulation of gene expression; GO:0010629//negative regulation of gene expression; GO:0014070//response to organic cyclic compound; GO:0015031//protein transport; GO:0015833//peptide transport; GO:0015931//nucleobase-containing compound transport; GO:0016070//RNA metabolic process; GO:0016071//mRNA metabolic process; GO:0016441//posttranscriptional gene silencing; GO:0016458//gene silencing; GO:0019222//regulation of metabolic process; GO:0019439//aromatic compound catabolic process; GO:0022414//reproductive process; GO:0031047//gene silencing by RNA; GO:0031050//dsRNA fragmentation; GO:0031053//primary miRNA processing; GO:0031503//protein complex localization; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0033036//macromolecule localization; GO:0033993//response to lipid; GO:0034470//ncRNA processing; GO:0034613//cellular protein localization; GO:0034641//cellular nitrogen compound metabolic process; GO:0034655//nucleobase-containing compound catabolic process; GO:0034660//ncRNA metabolic process; GO:0035194//posttranscriptional gene silencing by RNA; GO:0035195//gene silencing by miRNA; GO:0035196//production of miRNAs involved in gene silencing by miRNA; GO:0040029//regulation of gene expression, epigenetic; GO:0042221//response to chemical; GO:0042886//amide transport; GO:0043170//macromolecule metabolic process; GO:0043331//response to dsRNA; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044248//cellular catabolic process; GO:0044260//cellular macromolecule metabolic process; GO:0044265//cellular macromolecule catabolic process; GO:0044270//cellular nitrogen compound catabolic process; GO:0045184//establishment of protein localization; GO:0046483//heterocycle metabolic process; GO:0046700//heterocycle catabolic process; GO:0046907//intracellular transport; GO:0048519//negative regulation of biological process; GO:0048571//long-day photoperiodism; GO:0048573//photoperiodism, flowering; GO:0048574//long-day photoperiodism, flowering; GO:0048608//reproductive structure development; GO:0048731//system development; GO:0048856//anatomical structure development; GO:0050657//nucleic acid transport; GO:0050658//RNA transport; GO:0050789//regulation of biological process; GO:0050896//response to stimulus; GO:0051028//mRNA transport; GO:0051168//nuclear export; GO:0051169//nuclear transport; GO:0051179//localization; GO:0051234//establishment of localization; GO:0051236//establishment of RNA localization; GO:0051641//cellular localization; GO:0051649//establishment of localization in cell; GO:0051716//cellular response to stimulus; GO:0060255//regulation of macromolecule metabolic process; GO:0061458//reproductive system development; GO:0065007//biological regulation; GO:0070727//cellular macromolecule localization; GO:0070887//cellular response to chemical stimulus; GO:0070918//production of small RNA involved in gene silencing by RNA; GO:0071166//ribonucleoprotein complex localization; GO:0071310//cellular response to organic substance; GO:0071359//cellular response to dsRNA; GO:0071407//cellular response to organic cyclic compound; GO:0071426//ribonucleoprotein complex export from nucleus; GO:0071427//mRNA-containing ribonucleoprotein complex export from nucleus; GO:0071702//organic substance transport; GO:0071704//organic substance metabolic process; GO:0071705//nitrogen compound transport; GO:0090304//nucleic acid metabolic process; GO:0097305//response to alcohol; GO:1901360//organic cyclic compound metabolic process; GO:1901361//organic cyclic compound catabolic process; GO:1901575//organic substance catabolic process; GO:1901698//response to nitrogen compound; GO:1901699//cellular response to nitrogen compound; GO:1901700//response to oxygen-containing compound | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005845//mRNA cap binding complex; GO:0005846//nuclear cap binding complex; GO:0032991//macromolecular complex; GO:0034518//RNA cap binding complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044424//intracellular part; GO:0044464//cell part | GO:0000339//RNA cap binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003723//RNA binding; GO:0003729//mRNA binding; GO:0005488//binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K12882 | NCBP1, CBP80
NR
RWR76533.1 nuclear cap-binding protein subunit 1 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q10LJ0.1 RecName: Full=Nuclear cap-binding protein subunit 1; AltName: Full=80 kDa nuclear cap-binding protein; Short=CBP80; Short=NCBP 80 kDa subunit [Oryza sativa Japonica Group]
Biological context

Connected feature records

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