Feature identity
- Identifier
- PaHa12g12280.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,437 bp
- Genomic location
- 12:39,971,540–39,974,036
- Strand
- −
Hass · mRNA
PaHa12g12280.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,437
- bp
- 12:39,971,540–39,974,036
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa12g12280
- eggNOG
- Preferred name: HMGB13 | Seed ortholog: 337451.A0A3S3NQ69 | COG: S | eggNOG OG: HMG_box@131567|Aj-7, HMG_box@2759|Of-14
- Gene Ontology
- GO:0000793 condensed chromosome; GO:0000794 condensed nuclear chromosome; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0008150 biological_process
- KEGG
- EC: ec:2.1.1.354 | KO: K09273 | Pathway: 00310, 01100 | BRITE: 00001, 03000, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa12g12280.1-protein
derives_frommRNAPaHa12g12280.1
mRNAPaHa12g12280.1
part_ofgenePaHa12g12280
CDS
part_ofPaHa12g12280.1-CDS-12-1787993825:39971540..39971665mRNAPaHa12g12280.1
CDS
part_ofPaHa12g12280.1-CDS-12-1787993825:39971852..39971936mRNAPaHa12g12280.1
CDS
part_ofPaHa12g12280.1-CDS-12-1787993825:39972028..39972122mRNAPaHa12g12280.1
CDS
part_ofPaHa12g12280.1-CDS-12-1787993825:39972225..39972329mRNAPaHa12g12280.1
CDS
part_ofPaHa12g12280.1-CDS-12-1787993825:39972460..39972525mRNAPaHa12g12280.1
CDS
part_ofPaHa12g12280.1-CDS-12-1787993825:39972622..39972687mRNAPaHa12g12280.1
CDS
part_ofPaHa12g12280.1-CDS-12-1787993825:39972768..39972873mRNAPaHa12g12280.1
CDS
part_ofPaHa12g12280.1-CDS-12-1787993825:39972978..39973012mRNAPaHa12g12280.1
CDS
part_ofPaHa12g12280.1-CDS-12-1787993825:39973090..39973332mRNAPaHa12g12280.1
CDS
part_ofPaHa12g12280.1-CDS-12-1787993825:39973421..39973549mRNAPaHa12g12280.1
CDS
part_ofPaHa12g12280.1-CDS-12-1787993825:39973656..39974036mRNAPaHa12g12280.1
exon
part_ofPaHa12g12280.1-exon-12-1787993825:39971540..39971665mRNAPaHa12g12280.1
exon
part_ofPaHa12g12280.1-exon-12-1787993825:39971852..39971936mRNAPaHa12g12280.1
exon
part_ofPaHa12g12280.1-exon-12-1787993825:39972028..39972122mRNAPaHa12g12280.1
exon
part_ofPaHa12g12280.1-exon-12-1787993825:39972225..39972329mRNAPaHa12g12280.1
exon
part_ofPaHa12g12280.1-exon-12-1787993825:39972460..39972525mRNAPaHa12g12280.1
exon
part_ofPaHa12g12280.1-exon-12-1787993825:39972622..39972687mRNAPaHa12g12280.1
exon
part_ofPaHa12g12280.1-exon-12-1787993825:39972768..39972873mRNAPaHa12g12280.1
exon
part_ofPaHa12g12280.1-exon-12-1787993825:39972978..39973012mRNAPaHa12g12280.1
exon
part_ofPaHa12g12280.1-exon-12-1787993825:39973090..39973332mRNAPaHa12g12280.1
exon
part_ofPaHa12g12280.1-exon-12-1787993825:39973421..39973549mRNAPaHa12g12280.1
exon
part_ofPaHa12g12280.1-exon-12-1787993825:39973656..39974036mRNAPaHa12g12280.1
