Feature identity
- Identifier
- PaHa12g13850.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,992 bp
- Genomic location
- 12:42,318,052–42,324,400
- Strand
- −
Hass · mRNA
PaHa12g13850.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,992
- bp
- 12:42,318,052–42,324,400
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa12g13850
- eggNOG
- Preferred name: LOC104599494 | Seed ortholog: 337451.A0A443Q048 | COG: S | eggNOG OG: Auxin_resp@131567|A-1*, Auxin_resp@2759|B-2, Auxin_resp@3398|Cm-12, B3@131221|yd-19, B3@131567|A-1*, B3@3193|AHu-20, B3@33090|Id-12, B3@3398|BCh-24
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009733 response to auxin; GO:0009850 auxin metabolic process; GO:0010050 vegetative phase change; GO:0010158 abaxial cell fate specification; GO:0010582 floral meristem determinacy; GO:0031490 chromatin DNA binding; GO:0036094 small molecule binding; GO:0140677 molecular function activator activity; GO:1902584 positive regulation of response to water deprivation
- KEGG
- KO: K14486 | Pathway: 04075 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa12g13850.1-protein
derives_frommRNAPaHa12g13850.1
mRNAPaHa12g13850.1
part_ofgenePaHa12g13850
CDS
part_ofPaHa12g13850.1-CDS-12-1787993825:42318052..42318578mRNAPaHa12g13850.1
CDS
part_ofPaHa12g13850.1-CDS-12-1787993825:42318684..42318938mRNAPaHa12g13850.1
CDS
part_ofPaHa12g13850.1-CDS-12-1787993825:42319351..42319513mRNAPaHa12g13850.1
CDS
part_ofPaHa12g13850.1-CDS-12-1787993825:42320102..42320177mRNAPaHa12g13850.1
CDS
part_ofPaHa12g13850.1-CDS-12-1787993825:42320266..42320385mRNAPaHa12g13850.1
CDS
part_ofPaHa12g13850.1-CDS-12-1787993825:42322578..42322742mRNAPaHa12g13850.1
CDS
part_ofPaHa12g13850.1-CDS-12-1787993825:42322831..42322921mRNAPaHa12g13850.1
CDS
part_ofPaHa12g13850.1-CDS-12-1787993825:42323192..42323276mRNAPaHa12g13850.1
CDS
part_ofPaHa12g13850.1-CDS-12-1787993825:42323388..42323567mRNAPaHa12g13850.1
CDS
part_ofPaHa12g13850.1-CDS-12-1787993825:42323725..42323781mRNAPaHa12g13850.1
CDS
part_ofPaHa12g13850.1-CDS-12-1787993825:42324128..42324400mRNAPaHa12g13850.1
exon
part_ofPaHa12g13850.1-exon-12-1787993825:42318052..42318578mRNAPaHa12g13850.1
exon
part_ofPaHa12g13850.1-exon-12-1787993825:42318684..42318938mRNAPaHa12g13850.1
exon
part_ofPaHa12g13850.1-exon-12-1787993825:42319351..42319513mRNAPaHa12g13850.1
exon
part_ofPaHa12g13850.1-exon-12-1787993825:42320102..42320177mRNAPaHa12g13850.1
exon
part_ofPaHa12g13850.1-exon-12-1787993825:42320266..42320385mRNAPaHa12g13850.1
exon
part_ofPaHa12g13850.1-exon-12-1787993825:42322578..42322742mRNAPaHa12g13850.1
exon
part_ofPaHa12g13850.1-exon-12-1787993825:42322831..42322921mRNAPaHa12g13850.1
exon
part_ofPaHa12g13850.1-exon-12-1787993825:42323192..42323276mRNAPaHa12g13850.1
exon
part_ofPaHa12g13850.1-exon-12-1787993825:42323388..42323567mRNAPaHa12g13850.1
exon
part_ofPaHa12g13850.1-exon-12-1787993825:42323725..42323781mRNAPaHa12g13850.1
exon
part_ofPaHa12g13850.1-exon-12-1787993825:42324128..42324400mRNAPaHa12g13850.1
