Anise · gene

Chr01.g00628

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

5,695
bp
Chr01:6,631,548–6,637,242
genomic location
Record overview

Feature identity

Identifier
Chr01.g00628
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
5,695 bp
Genomic location
Chr01:6,631,548–6,637,242
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
29760.VIT_09s0002g01160.t01,K,[Transcription initiation factor TFIID subunit]
Gene Ontology
Transcription initiation factor TFIID subunit | GO:0001101//response to acid chemical; GO:0006139//nucleobase-containing compound metabolic process; GO:0006325//chromatin organization; GO:0006351//transcription, DNA-templated; GO:0006355//regulation of transcription, DNA-templated; GO:0006357//regulation of transcription from RNA polymerase II promoter; GO:0006366//transcription from RNA polymerase II promoter; GO:0006464//cellular protein modification process; GO:0006473//protein acetylation; GO:0006475//internal protein amino acid acetylation; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006996//organelle organization; GO:0007584//response to nutrient; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009605//response to external stimulus; GO:0009889//regulation of biosynthetic process; GO:0009891//positive regulation of biosynthetic process; GO:0009893//positive regulation of metabolic process; GO:0009987//cellular process; GO:0009991//response to extracellular stimulus; GO:0010033//response to organic substance; GO:0010243//response to organonitrogen compound; GO:0010467//gene expression; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010557//positive regulation of macromolecule biosynthetic process; GO:0010604//positive regulation of macromolecule metabolic process; GO:0010628//positive regulation of gene expression; GO:0016043//cellular component organization; GO:0016070//RNA metabolic process; GO:0016569//covalent chromatin modification; GO:0016570//histone modification; GO:0016573//histone acetylation; GO:0018130//heterocycle biosynthetic process; GO:0018193//peptidyl-amino acid modification; GO:0018205//peptidyl-lysine modification; GO:0018393//internal peptidyl-lysine acetylation; GO:0018394//peptidyl-lysine acetylation; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019438//aromatic compound biosynthetic process; GO:0019538//protein metabolic process; GO:0031323//regulation of cellular metabolic process; GO:0031325//positive regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031328//positive regulation of cellular biosynthetic process; GO:0031667//response to nutrient levels; GO:0032774//RNA biosynthetic process; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0036211//protein modification process; GO:0042221//response to chemical; GO:0042493//response to drug; GO:0043170//macromolecule metabolic process; GO:0043200//response to amino acid; GO:0043412//macromolecule modification; GO:0043543//protein acylation; GO:0043966//histone H3 acetylation; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044267//cellular protein metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0045893//positive regulation of transcription, DNA-templated; GO:0045935//positive regulation of nucleobase-containing compound metabolic process; GO:0045944//positive regulation of transcription from RNA polymerase II promoter; GO:0046483//heterocycle metabolic process; GO:0048518//positive regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051173//positive regulation of nitrogen compound metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051254//positive regulation of RNA metabolic process; GO:0051276//chromosome organization; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0071704//organic substance metabolic process; GO:0071840//cellular component organization or biogenesis; GO:0080090//regulation of primary metabolic process; GO:0090304//nucleic acid metabolic process; GO:0097659//nucleic acid-templated transcription; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901564//organonitrogen compound metabolic process; GO:1901576//organic substance biosynthetic process; GO:1901698//response to nitrogen compound; GO:1901700//response to oxygen-containing compound; GO:1902065//response to L-glutamate; GO:1902680//positive regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903508//positive regulation of nucleic acid-templated transcription; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0000123//histone acetyltransferase complex; GO:0000124//SAGA complex; GO:0000428//DNA-directed RNA polymerase complex; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005667//transcription factor complex; GO:0005669//transcription factor TFIID complex; GO:0016591//DNA-directed RNA polymerase II, holoenzyme; GO:0030880//RNA polymerase complex; GO:0031248//protein acetyltransferase complex; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0034708//methyltransferase complex; GO:0035097//histone methyltransferase complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044446//intracellular organelle part; GO:0044451//nucleoplasm part; GO:0044464//cell part; GO:0044665//MLL1/2 complex; GO:0044798//nuclear transcription factor complex; GO:0055029//nuclear DNA-directed RNA polymerase complex; GO:0061695//transferase complex, transferring phosphorus-containing groups; GO:0070013//intracellular organelle lumen; GO:0070461//SAGA-type complex; GO:0071339//MLL1 complex; GO:0090575//RNA polymerase II transcription factor complex; GO:1902493//acetyltransferase complex; GO:1902494//catalytic complex; GO:1905368//peptidase complex; GO:1990234//transferase complex | GO:0001067//regulatory region nucleic acid binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0005488//binding; GO:0005515//protein binding; GO:0008134//transcription factor binding; GO:0044212//transcription regulatory region DNA binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K03133 | TAF9B, TAF9
NR
RWR78780.1 transcription initiation factor TFIID subunit 9 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q9SYH2.1 RecName: Full=Transcription initiation factor TFIID subunit 9; AltName: Full=TATA binding protein associated factor 21kDa subunit; AltName: Full=TBP-associated factor 9; Short=AtTAF9 [Arabidopsis thaliana]
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.