Anise · mRNA

Chr12.g83303.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

849
bp
Chr12:50,860,157–50,874,435
genomic location
Record overview

Feature identity

Identifier
Chr12.g83303.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
849 bp
Genomic location
Chr12:50,860,157–50,874,435
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010274964.1,S,[transducin family protein WD-40 repeat family]
Gene Ontology
transducin family protein WD-40 repeat family | GO:0000045//autophagosome assembly; GO:0000422//mitophagy; GO:0000423//macromitophagy; GO:0006914//autophagy; GO:0006950//response to stress; GO:0006996//organelle organization; GO:0007005//mitochondrion organization; GO:0007033//vacuole organization; GO:0007275//multicellular organism development; GO:0007399//nervous system development; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0008285//negative regulation of cell proliferation; GO:0009056//catabolic process; GO:0009790//embryo development; GO:0009792//embryo development ending in birth or egg hatching; GO:0009888//tissue development; GO:0009893//positive regulation of metabolic process; GO:0009894//regulation of catabolic process; GO:0009896//positive regulation of catabolic process; GO:0009987//cellular process; GO:0010506//regulation of autophagy; GO:0010508//positive regulation of autophagy; GO:0010562//positive regulation of phosphorus metabolic process; GO:0010656//negative regulation of muscle cell apoptotic process; GO:0010660//regulation of muscle cell apoptotic process; GO:0010662//regulation of striated muscle cell apoptotic process; GO:0010664//negative regulation of striated muscle cell apoptotic process; GO:0010665//regulation of cardiac muscle cell apoptotic process; GO:0010667//negative regulation of cardiac muscle cell apoptotic process; GO:0010941//regulation of cell death; GO:0016043//cellular component organization; GO:0016236//macroautophagy; GO:0019216//regulation of lipid metabolic process; GO:0019220//regulation of phosphate metabolic process; GO:0019222//regulation of metabolic process; GO:0021915//neural tube development; GO:0022411//cellular component disassembly; GO:0022607//cellular component assembly; GO:0031323//regulation of cellular metabolic process; GO:0031325//positive regulation of cellular metabolic process; GO:0031329//regulation of cellular catabolic process; GO:0031331//positive regulation of cellular catabolic process; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0033554//cellular response to stress; GO:0033674//positive regulation of kinase activity; GO:0035295//tube development; GO:0042127//regulation of cell proliferation; GO:0042325//regulation of phosphorylation; GO:0042327//positive regulation of phosphorylation; GO:0042981//regulation of apoptotic process; GO:0043009//chordate embryonic development; GO:0043066//negative regulation of apoptotic process; GO:0043067//regulation of programmed cell death; GO:0043069//negative regulation of programmed cell death; GO:0043085//positive regulation of catalytic activity; GO:0043523//regulation of neuron apoptotic process; GO:0043524//negative regulation of neuron apoptotic process; GO:0043549//regulation of kinase activity; GO:0043550//regulation of lipid kinase activity; GO:0043551//regulation of phosphatidylinositol 3-kinase activity; GO:0043552//positive regulation of phosphatidylinositol 3-kinase activity; GO:0044085//cellular component biogenesis; GO:0044093//positive regulation of molecular function; GO:0044237//cellular metabolic process; GO:0044248//cellular catabolic process; GO:0045834//positive regulation of lipid metabolic process; GO:0045937//positive regulation of phosphate metabolic process; GO:0048518//positive regulation of biological process; GO:0048519//negative regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0048523//negative regulation of cellular process; GO:0048731//system development; GO:0048856//anatomical structure development; GO:0050789//regulation of biological process; GO:0050790//regulation of catalytic activity; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051174//regulation of phosphorus metabolic process; GO:0051338//regulation of transferase activity; GO:0051347//positive regulation of transferase activity; GO:0051716//cellular response to stimulus; GO:0060429//epithelium development; GO:0060548//negative regulation of cell death; GO:0061726//mitochondrion disassembly; GO:0065007//biological regulation; GO:0065009//regulation of molecular function; GO:0070925//organelle assembly; GO:0071840//cellular component organization or biogenesis; GO:0080090//regulation of primary metabolic process; GO:0090218//positive regulation of lipid kinase activity; GO:0098780//response to mitochondrial depolarisation; GO:1901214//regulation of neuron death; GO:1901215//negative regulation of neuron death; GO:1903008//organelle disassembly; GO:1903725//regulation of phospholipid metabolic process; GO:1903727//positive regulation of phospholipid metabolic process; GO:1905037//autophagosome organization | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005737//cytoplasm; GO:0005739//mitochondrion; GO:0005829//cytosol; GO:0005856//cytoskeleton; GO:0005929//cilium; GO:0005930//axoneme; GO:0030139//endocytic vesicle; GO:0031410//cytoplasmic vesicle; GO:0031982//vesicle; GO:0032838//cell projection cytoplasm; GO:0042995//cell projection; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043228//non-membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043232//intracellular non-membrane-bounded organelle; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044430//cytoskeletal part; GO:0044441//ciliary part; GO:0044444//cytoplasmic part; GO:0044446//intracellular organelle part; GO:0044463//cell projection part; GO:0044464//cell part; GO:0045335//phagocytic vesicle; GO:0097014//ciliary plasm; GO:0097708//intracellular vesicle; GO:0099568//cytoplasmic region; GO:0120025//plasma membrane bounded cell projection | GO:0003674//molecular_function; GO:0005488//binding; GO:0005515//protein binding; GO:0019899//enzyme binding; GO:0031625//ubiquitin protein ligase binding; GO:0044389//ubiquitin-like protein ligase binding; GO:0051020//GTPase binding
KEGG
K17985 | AMBRA1
NR
RWR96035.1 WD40 repeat [Cinnamomum micranthum f. kanehirae]
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.