Anise · mRNA

Chr10.g73139.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

989
bp
Chr10:46,736,181–46,740,433
genomic location
Record overview

Feature identity

Identifier
Chr10.g73139.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
989 bp
Genomic location
Chr10:46,736,181–46,740,433
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010242492.1,K,[DNA-directed RNA polymerase II]
Gene Ontology
DNA-directed RNA polymerase II | GO:0000291//nuclear-transcribed mRNA catabolic process, exonucleolytic; GO:0000956//nuclear-transcribed mRNA catabolic process; GO:0006139//nucleobase-containing compound metabolic process; GO:0006351//transcription, DNA-templated; GO:0006352//DNA-templated transcription, initiation; GO:0006366//transcription from RNA polymerase II promoter; GO:0006367//transcription initiation from RNA polymerase II promoter; GO:0006401//RNA catabolic process; GO:0006402//mRNA catabolic process; GO:0006417//regulation of translation; GO:0006446//regulation of translational initiation; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009056//catabolic process; GO:0009057//macromolecule catabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009889//regulation of biosynthetic process; GO:0009891//positive regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0009893//positive regulation of metabolic process; GO:0009894//regulation of catabolic process; GO:0009896//positive regulation of catabolic process; GO:0009987//cellular process; GO:0010467//gene expression; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010557//positive regulation of macromolecule biosynthetic process; GO:0010604//positive regulation of macromolecule metabolic process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010608//posttranscriptional regulation of gene expression; GO:0010628//positive regulation of gene expression; GO:0010629//negative regulation of gene expression; GO:0016070//RNA metabolic process; GO:0016071//mRNA metabolic process; GO:0018130//heterocycle biosynthetic process; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019438//aromatic compound biosynthetic process; GO:0019439//aromatic compound catabolic process; GO:0031323//regulation of cellular metabolic process; GO:0031325//positive regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031328//positive regulation of cellular biosynthetic process; GO:0031329//regulation of cellular catabolic process; GO:0031331//positive regulation of cellular catabolic process; GO:0032268//regulation of cellular protein metabolic process; GO:0032270//positive regulation of cellular protein metabolic process; GO:0032774//RNA biosynthetic process; GO:0034248//regulation of cellular amide metabolic process; GO:0034250//positive regulation of cellular amide metabolic process; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0034655//nucleobase-containing compound catabolic process; GO:0043170//macromolecule metabolic process; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044248//cellular catabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044265//cellular macromolecule catabolic process; GO:0044270//cellular nitrogen compound catabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0045727//positive regulation of translation; GO:0045935//positive regulation of nucleobase-containing compound metabolic process; GO:0045948//positive regulation of translational initiation; GO:0046483//heterocycle metabolic process; GO:0046700//heterocycle catabolic process; GO:0048518//positive regulation of biological process; GO:0048519//negative regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051173//positive regulation of nitrogen compound metabolic process; GO:0051246//regulation of protein metabolic process; GO:0051247//positive regulation of protein metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051254//positive regulation of RNA metabolic process; GO:0060211//regulation of nuclear-transcribed mRNA poly(A) tail shortening; GO:0060213//positive regulation of nuclear-transcribed mRNA poly(A) tail shortening; GO:0060255//regulation of macromolecule metabolic process; GO:0061013//regulation of mRNA catabolic process; GO:0061014//positive regulation of mRNA catabolic process; GO:0065007//biological regulation; GO:0071704//organic substance metabolic process; GO:0080090//regulation of primary metabolic process; GO:0090304//nucleic acid metabolic process; GO:0097659//nucleic acid-templated transcription; GO:1900151//regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:1900153//positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:1901360//organic cyclic compound metabolic process; GO:1901361//organic cyclic compound catabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901575//organic substance catabolic process; GO:1901576//organic substance biosynthetic process; GO:1903311//regulation of mRNA metabolic process; GO:1903313//positive regulation of mRNA metabolic process; GO:2000112//regulation of cellular macromolecule biosynthetic process | GO:0000428//DNA-directed RNA polymerase complex; GO:0000932//P-body; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005665//DNA-directed RNA polymerase II, core complex; GO:0005737//cytoplasm; GO:0016591//DNA-directed RNA polymerase II, holoenzyme; GO:0030880//RNA polymerase complex; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0035770//ribonucleoprotein granule; GO:0036464//cytoplasmic ribonucleoprotein granule; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043228//non-membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043232//intracellular non-membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044444//cytoplasmic part; GO:0044446//intracellular organelle part; GO:0044451//nucleoplasm part; GO:0044464//cell part; GO:0055029//nuclear DNA-directed RNA polymerase complex; GO:0061695//transferase complex, transferring phosphorus-containing groups; GO:0070013//intracellular organelle lumen; GO:1902494//catalytic complex; GO:1990234//transferase complex; GO:1990904//ribonucleoprotein complex | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003697//single-stranded DNA binding; GO:0003723//RNA binding; GO:0003727//single-stranded RNA binding; GO:0005488//binding; GO:0005515//protein binding; GO:0031369//translation initiation factor binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K03015 | RPB7, POLR2G
NR
RWR94437.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
P46279.1 RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 [Glycine max]
Biological context

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