Feature identity
- Identifier
- PaHa_c78g00100.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,574 bp
- Genomic location
- unplaced_contig_78:15,342–18,606
- Strand
- +
Hass · mRNA
PaHa_c78g00100.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,574
- bp
- unplaced_contig_78:15,342–18,606
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c78g00100
- eggNOG
- Preferred name: YSH1 | Seed ortholog: 1328760.A0A165HV81 | COG: COG1236 | eggNOG OG: Beta-Casp@131567|K-4, Beta-Casp@2759|AH-8, CPSF73-100_C@2759|A-1, Lactamase_B@131567|Cp-10, RMMBL@131567|B-2, RMMBL@2759|Ch-11
- Gene Ontology
- GO:0003674 molecular_function; GO:0004521 RNA endonuclease activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005829 cytosol; GO:0005847 mRNA cleavage and polyadenylation specificity factor complex; GO:0006369 termination of RNA polymerase II transcription; GO:0006397 mRNA processing; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0008380 RNA splicing; GO:0009410 response to xenobiotic stimulus; GO:0030846 termination of RNA polymerase II transcription, poly(A)-coupled; GO:0031126 sno(s)RNA 3'-end processing; GO:0034247 snoRNA splicing; GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway
- KEGG
- KO: K14403 | Pathway: 03015 | BRITE: 00001, 03019, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c78g00100.1-protein
derives_frommRNAPaHa_c78g00100.1
mRNAPaHa_c78g00100.1
part_ofgenePaHa_c78g00100
CDS
part_ofPaHa_c78g00100.1-CDS-unplaced_contig_78-1787993825:15342..15619mRNAPaHa_c78g00100.1
CDS
part_ofPaHa_c78g00100.1-CDS-unplaced_contig_78-1787993825:16127..17144mRNAPaHa_c78g00100.1
CDS
part_ofPaHa_c78g00100.1-CDS-unplaced_contig_78-1787993825:17190..17856mRNAPaHa_c78g00100.1
CDS
part_ofPaHa_c78g00100.1-CDS-unplaced_contig_78-1787993825:17996..18606mRNAPaHa_c78g00100.1
exon
part_ofPaHa_c78g00100.1-exon-unplaced_contig_78-1787993825:15342..15619mRNAPaHa_c78g00100.1
exon
part_ofPaHa_c78g00100.1-exon-unplaced_contig_78-1787993825:16127..17144mRNAPaHa_c78g00100.1
exon
part_ofPaHa_c78g00100.1-exon-unplaced_contig_78-1787993825:17190..17856mRNAPaHa_c78g00100.1
exon
part_ofPaHa_c78g00100.1-exon-unplaced_contig_78-1787993825:17996..18606mRNAPaHa_c78g00100.1
