PaHa01g35420.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,765: bp
1:88,297,914–88,308,466: genomic location

Record overview

Feature identity

Identifier: PaHa01g35420.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 3,765 bp
Genomic location: 1:88,297,914–88,308,466
Strand: −

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa01g35420

eggNOG: Preferred name: LOC103697148 | Seed ortholog: 337451.A0A3S3NJQ2 | COG: S | eggNOG OG: ABC_membrane@131567|aH-23, ABC_membrane@2759|CyF-36, ABC_membrane@3193|kVH-50, ABC_membrane@35493|WZp-46, ABC_tran|0U9VYJ@131567
Gene Ontology: GO:0000086 G2/M transition of mitotic cell cycle; GO:0001654 eye development; GO:0001666 response to hypoxia; GO:0001894 tissue homeostasis; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005634 nucleus; GO:0005739 mitochondrion; GO:0005829 cytosol; GO:0006473 protein acetylation; GO:0006629 lipid metabolic process; GO:0006631 fatty acid metabolic process; GO:0006699 bile acid biosynthetic process; GO:0006703 estrogen biosynthetic process; GO:0006805 xenobiotic metabolic process; GO:0006855 xenobiotic transmembrane transport; GO:0006979 response to oxidative stress; GO:0007173 epidermal growth factor receptor signaling pathway; GO:0007507 heart development; GO:0007512 adult heart development; GO:0008206 bile acid metabolic process; GO:0008354 primordial germ cell migration; GO:0008559 ABC-type xenobiotic transporter activity; GO:0008584 male gonad development; GO:0008585 female gonad development; GO:0009410 response to xenobiotic stimulus; GO:0009507 chloroplast; GO:0009636 response to toxic substance; GO:0010038 response to metal ion; GO:0010467 gene expression; GO:0010498 proteasomal protein catabolic process; GO:0014045 establishment of endothelial blood-brain barrier; GO:0015125 bile acid transmembrane transporter activity; GO:0015126 canalicular bile acid transmembrane transporter activity; GO:0015144 carbohydrate transmembrane transporter activity; GO:0015432 ABC-type bile acid transporter activity; GO:0015462 ABC-type protein transporter activity; GO:0015562 efflux transmembrane transporter activity; GO:0015721 bile acid and bile salt transport; GO:0015722 canalicular bile acid transport; GO:0016567 protein ubiquitination; GO:0016887 ATP hydrolysis activity; GO:0017085 response to insecticide; GO:0019534 toxin transmembrane transporter activity; GO:0022008 neurogenesis; GO:0022857 transmembrane transporter activity; GO:0030182 neuron differentiation; GO:0030587 sorocarp development; GO:0031625 ubiquitin protein ligase binding; GO:0031998 regulation of fatty acid beta-oxidation; GO:0032376 positive regulation of cholesterol transport; GO:0032782 bile acid secretion; GO:0034436 glycoprotein transport; GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing; GO:0035640 exploration behavior; GO:0035932 aldosterone secretion; GO:0042391 regulation of membrane potential; GO:0042626 ATPase-coupled transmembrane transporter activity; GO:0042632 cholesterol homeostasis; GO:0042908 xenobiotic transport; GO:0042910 xenobiotic transmembrane transporter activity; GO:0043627 response to estrogen; GO:0045087 innate immune response; GO:0045332 phospholipid translocation; GO:0045471 response to ethanol; GO:0046618 xenobiotic export from cell; GO:0046865 terpenoid transport; GO:0046943 carboxylic acid transmembrane transporter activity; GO:0048568 embryonic organ development; GO:0050787 detoxification of mercury ion; GO:0050829 defense response to Gram-negative bacterium; GO:0050830 defense response to Gram-positive bacterium; GO:0051384 response to glucocorticoid; GO:0055007 cardiac muscle cell differentiation; GO:0055085 transmembrane transport; GO:0055088 lipid homeostasis; GO:0055091 phospholipid homeostasis; GO:0060857 establishment of glial blood-brain barrier; GO:0061092 positive regulation of phospholipid translocation; GO:0061843 Sertoli cell barrier remodeling; GO:0070633 transepithelial transport; GO:0070730 cAMP transport; GO:0071466 cellular response to xenobiotic stimulus; GO:0072089 stem cell proliferation; GO:0090554 phosphatidylcholine floppase activity; GO:0090555 phosphatidylethanolamine flippase activity; GO:0093002 response to nematicide; GO:0097254 renal tubular secretion; GO:0097719 neural tissue regeneration; GO:0099038 ceramide floppase activity; GO:0099040 ceramide translocation; GO:0120189 positive regulation of bile acid secretion; GO:0140115 export across plasma membrane; GO:0140326 ATPase-coupled intramembrane lipid carrier activity; GO:0140328 floppase activity; GO:0140341 phosphatidylethanolamine floppase activity; GO:0140394 ABC-type azole transporter activity; GO:0150104 transport across blood-brain barrier; GO:1901557 response to fenofibrate; GO:1903413 cellular response to bile acid; GO:1905039 carboxylic acid transmembrane transport; GO:1990169 stress response to copper ion; GO:1990170 stress response to cadmium ion; GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane; GO:1990962 xenobiotic transport across blood-brain barrier; GO:2001140 positive regulation of phospholipid transport; GO:2001225 regulation of chloride transport
KEGG: EC: ec:7.6.2.2 | KO: K05658 | Pathway: 02010 | BRITE: 00001, 01000, 02000, 04090, 04147

Biological context