Anise · mRNA

Chr05.g42079.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

6,662
bp
Chr05:63,723,298–63,765,623
genomic location
Record overview

Feature identity

Identifier
Chr05.g42079.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
6,662 bp
Genomic location
Chr05:63,723,298–63,765,623
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
29760.VIT_06s0004g00450.t01,K,[Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors]
Gene Ontology
Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors | GO:0006810//transport; GO:0008150//biological_process; GO:0008643//carbohydrate transport; GO:0034219//carbohydrate transmembrane transport; GO:0040034//regulation of development, heterochronic; GO:0050789//regulation of biological process; GO:0050793//regulation of developmental process; GO:0051179//localization; GO:0051234//establishment of localization; GO:0051239//regulation of multicellular organismal process; GO:0055085//transmembrane transport; GO:0065007//biological regulation; GO:0071702//organic substance transport; GO:0090213//regulation of radial pattern formation; GO:2000026//regulation of multicellular organismal development | GO:0005575//cellular_component; GO:0016020//membrane; GO:0016021//integral component of membrane; GO:0031224//intrinsic component of membrane; GO:0044425//membrane part | GO:0003674//molecular_function; GO:0005215//transporter activity; GO:0015144//carbohydrate transmembrane transporter activity; GO:0022857//transmembrane transporter activity; GO:0051119//sugar transmembrane transporter activity
KEGG
K15164 | MED13
NR
OVA06369.1 Mediator complex [Macleaya cordata]
Swiss-Prot
F4I096.1 RecName: Full=Mediator of RNA polymerase II transcription subunit 13; AltName: Full=Protein GRAND CENTRAL; AltName: Full=Protein MACCHI-BOU 2 [Arabidopsis thaliana]
Biological context

Connected feature records

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