Feature identity
- Identifier
- PaHa_c173g00060.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,667 bp
- Genomic location
- unplaced_contig_173:6,865–9,693
- Strand
- +
Hass · mRNA
PaHa_c173g00060.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,667
- bp
- unplaced_contig_173:6,865–9,693
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c173g00060
- eggNOG
- Preferred name: rsv2 | Seed ortholog: 1287680.R1GCF3 | COG: S | eggNOG OG: zf-C2H2@131567|Aqn-21, zf-C2H2@2759|EWG-27, zf-C2H2@33154|FUu-28
- Gene Ontology
- GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0005634 nucleus; GO:0006357 regulation of transcription by RNA polymerase II
- KEGG
- EC: ec:3.4.19.12 | KO: K09205, K09468, K17845, K20797, K21543, K21545, K21597, K24134 | Pathway: 04011, 04068, 04113, 04138, 04213 | BRITE: 00001, 01000, 03000, 03036, 04121
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c173g00060.1-protein
derives_fromgenePaHa_c173g00060
CDS
part_ofPaHa_c173g00060.1-CDS-unplaced_contig_173-1787993825:6865..7456CDS
part_ofPaHa_c173g00060.1-CDS-unplaced_contig_173-1787993825:7567..8622CDS
part_ofPaHa_c173g00060.1-CDS-unplaced_contig_173-1787993825:8675..9693exon
part_ofPaHa_c173g00060.1-exon-unplaced_contig_173-1787993825:6865..7456exon
part_ofPaHa_c173g00060.1-exon-unplaced_contig_173-1787993825:7567..8622exon
part_ofPaHa_c173g00060.1-exon-unplaced_contig_173-1787993825:8675..9693