Feature identity
- Identifier
- PaHa_c181g00300.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 528 bp
- Genomic location
- unplaced_contig_181:35,938–36,677
- Strand
- +
Hass · mRNA
PaHa_c181g00300.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 528
- bp
- unplaced_contig_181:35,938–36,677
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c181g00300
- eggNOG
- Preferred name: tfa2 | Seed ortholog: 1507870.A0A1V8TIG9 | COG: S | eggNOG OG: TFA2_Winged_2@134362|Ov-20, TFA2_Winged_2@2759|A-1, TFIIE_beta@2759|A-1
- Gene Ontology
- GO:0000993 RNA polymerase II complex binding; GO:0001097 TFIIH-class transcription factor complex binding; GO:0003697 single-stranded DNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005673 transcription factor TFIIE complex; GO:0005730 nucleolus; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0097550 transcription preinitiation complex
- KEGG
- KO: K03137 | Pathway: 03022 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c181g00300.1-protein
derives_fromgenePaHa_c181g00300
CDS
part_ofPaHa_c181g00300.1-CDS-unplaced_contig_181-1787993825:35938..36094CDS
part_ofPaHa_c181g00300.1-CDS-unplaced_contig_181-1787993825:36137..36417CDS
part_ofPaHa_c181g00300.1-CDS-unplaced_contig_181-1787993825:36588..36677exon
part_ofPaHa_c181g00300.1-exon-unplaced_contig_181-1787993825:35938..36094exon
part_ofPaHa_c181g00300.1-exon-unplaced_contig_181-1787993825:36137..36417exon
part_ofPaHa_c181g00300.1-exon-unplaced_contig_181-1787993825:36588..36677