Anise · mRNA

Chr01.g07973.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

4,154
bp
Chr01:77,154,084–77,195,324
genomic location
Record overview

Feature identity

Identifier
Chr01.g07973.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
4,154 bp
Genomic location
Chr01:77,154,084–77,195,324
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010257710.1,K,[transcription]
Gene Ontology
transcription | GO:0000075//cell cycle checkpoint; GO:0000077//DNA damage checkpoint; GO:0000278//mitotic cell cycle; GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:0000289//nuclear-transcribed mRNA poly(A) tail shortening; GO:0000956//nuclear-transcribed mRNA catabolic process; GO:0001701//in utero embryonic development; GO:0001824//blastocyst development; GO:0001825//blastocyst formation; GO:0001829//trophectodermal cell differentiation; GO:0006139//nucleobase-containing compound metabolic process; GO:0006401//RNA catabolic process; GO:0006402//mRNA catabolic process; GO:0006417//regulation of translation; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006950//response to stress; GO:0006974//cellular response to DNA damage stimulus; GO:0006977//DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest; GO:0007049//cell cycle; GO:0007093//mitotic cell cycle checkpoint; GO:0007154//cell communication; GO:0007165//signal transduction; GO:0007275//multicellular organism development; GO:0007346//regulation of mitotic cell cycle; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009056//catabolic process; GO:0009057//macromolecule catabolic process; GO:0009653//anatomical structure morphogenesis; GO:0009790//embryo development; GO:0009792//embryo development ending in birth or egg hatching; GO:0009889//regulation of biosynthetic process; GO:0009890//negative regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0009966//regulation of signal transduction; GO:0009968//negative regulation of signal transduction; GO:0009987//cellular process; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010558//negative regulation of macromolecule biosynthetic process; GO:0010564//regulation of cell cycle process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010608//posttranscriptional regulation of gene expression; GO:0010629//negative regulation of gene expression; GO:0010646//regulation of cell communication; GO:0010648//negative regulation of cell communication; GO:0010948//negative regulation of cell cycle process; GO:0016070//RNA metabolic process; GO:0016071//mRNA metabolic process; GO:0017148//negative regulation of translation; GO:0019222//regulation of metabolic process; GO:0019439//aromatic compound catabolic process; GO:0022402//cell cycle process; GO:0023051//regulation of signaling; GO:0023052//signaling; GO:0023057//negative regulation of signaling; GO:0030154//cell differentiation; GO:0030330//DNA damage response, signal transduction by p53 class mediator; GO:0031323//regulation of cellular metabolic process; GO:0031324//negative regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031327//negative regulation of cellular biosynthetic process; GO:0031570//DNA integrity checkpoint; GO:0031571//mitotic G1 DNA damage checkpoint; GO:0032268//regulation of cellular protein metabolic process; GO:0032269//negative regulation of cellular protein metabolic process; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0033143//regulation of intracellular steroid hormone receptor signaling pathway; GO:0033144//negative regulation of intracellular steroid hormone receptor signaling pathway; GO:0033146//regulation of intracellular estrogen receptor signaling pathway; GO:0033147//negative regulation of intracellular estrogen receptor signaling pathway; GO:0033554//cellular response to stress; GO:0034248//regulation of cellular amide metabolic process; GO:0034249//negative regulation of cellular amide metabolic process; GO:0034641//cellular nitrogen compound metabolic process; GO:0034655//nucleobase-containing compound catabolic process; GO:0035556//intracellular signal transduction; GO:0042770//signal transduction in response to DNA damage; GO:0043009//chordate embryonic development; GO:0043170//macromolecule metabolic process; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044248//cellular catabolic process; GO:0044260//cellular macromolecule metabolic process; GO:0044265//cellular macromolecule catabolic process; GO:0044270//cellular nitrogen compound catabolic process; GO:0044773//mitotic DNA damage checkpoint; GO:0044774//mitotic DNA integrity checkpoint; GO:0044783//G1 DNA damage checkpoint; GO:0044819//mitotic G1/S transition checkpoint; GO:0045786//negative regulation of cell cycle; GO:0045787//positive regulation of cell cycle; GO:0045930//negative regulation of mitotic cell cycle; GO:0046483//heterocycle metabolic process; GO:0046700//heterocycle catabolic process; GO:0048518//positive regulation of biological process; GO:0048519//negative regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0048523//negative regulation of cellular process; GO:0048583//regulation of response to stimulus; GO:0048585//negative regulation of response to stimulus; GO:0048646//anatomical structure formation involved in morphogenesis; GO:0048856//anatomical structure development; GO:0048869//cellular developmental process; GO:0050789//regulation of biological process; GO:0050793//regulation of developmental process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051172//negative regulation of nitrogen compound metabolic process; GO:0051239//regulation of multicellular organismal process; GO:0051246//regulation of protein metabolic process; GO:0051248//negative regulation of protein metabolic process; GO:0051716//cellular response to stimulus; GO:0051726//regulation of cell cycle; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0071156//regulation of cell cycle arrest; GO:0071158//positive regulation of cell cycle arrest; GO:0071704//organic substance metabolic process; GO:0072331//signal transduction by p53 class mediator; GO:0072395//signal transduction involved in cell cycle checkpoint; GO:0072401//signal transduction involved in DNA integrity checkpoint; GO:0072413//signal transduction involved in mitotic cell cycle checkpoint; GO:0072422//signal transduction involved in DNA damage checkpoint; GO:0072431//signal transduction involved in mitotic G1 DNA damage checkpoint; GO:0080090//regulation of primary metabolic process; GO:0090068//positive regulation of cell cycle process; GO:0090304//nucleic acid metabolic process; GO:1901360//organic cyclic compound metabolic process; GO:1901361//organic cyclic compound catabolic process; GO:1901575//organic substance catabolic process; GO:1901987//regulation of cell cycle phase transition; GO:1901988//negative regulation of cell cycle phase transition; GO:1901990//regulation of mitotic cell cycle phase transition; GO:1901991//negative regulation of mitotic cell cycle phase transition; GO:1902400//intracellular signal transduction involved in G1 DNA damage checkpoint; GO:1902402//signal transduction involved in mitotic DNA damage checkpoint; GO:1902403//signal transduction involved in mitotic DNA integrity checkpoint; GO:1902806//regulation of cell cycle G1/S phase transition; GO:1902807//negative regulation of cell cycle G1/S phase transition; GO:1903047//mitotic cell cycle process; GO:2000036//regulation of stem cell population maintenance; GO:2000045//regulation of G1/S transition of mitotic cell cycle; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000113//negative regulation of cellular macromolecule biosynthetic process; GO:2000134//negative regulation of G1/S transition of mitotic cell cycle | GO:0000932//P-body; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005737//cytoplasm; GO:0005829//cytosol; GO:0030014//CCR4-NOT complex; GO:0030015//CCR4-NOT core complex; GO:0032991//macromolecular complex; GO:0035770//ribonucleoprotein granule; GO:0036464//cytoplasmic ribonucleoprotein granule; GO:0043226//organelle; GO:0043228//non-membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043232//intracellular non-membrane-bounded organelle; GO:0044424//intracellular part; GO:0044444//cytoplasmic part; GO:0044464//cell part; GO:1990904//ribonucleoprotein complex | -
KEGG
K12580 | CNOT3, NOT3
NR
RWR80388.1 CCR4-Not complex component [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q8K0V4.1 RecName: Full=CCR4-NOT transcription complex subunit 3; AltName: Full=CCR4-associated factor 3 [Mus musculus]
Biological context

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