Anise · mRNA

Chr01.g07863.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,211
bp
Chr01:75,426,843–75,428,053
genomic location
Record overview

Feature identity

Identifier
Chr01.g07863.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
1,211 bp
Genomic location
Chr01:75,426,843–75,428,053
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
3760.EMJ10743,K,[Nuclear transcription factor Y subunit]
Gene Ontology
Nuclear transcription factor Y subunit | GO:0001101//response to acid chemical; GO:0006109//regulation of carbohydrate metabolic process; GO:0006355//regulation of transcription, DNA-templated; GO:0007154//cell communication; GO:0007165//signal transduction; GO:0008150//biological_process; GO:0009719//response to endogenous stimulus; GO:0009725//response to hormone; GO:0009737//response to abscisic acid; GO:0009738//abscisic acid-activated signaling pathway; GO:0009739//response to gibberellin; GO:0009740//gibberellic acid mediated signaling pathway; GO:0009755//hormone-mediated signaling pathway; GO:0009889//regulation of biosynthetic process; GO:0009891//positive regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0009893//positive regulation of metabolic process; GO:0009987//cellular process; GO:0010029//regulation of seed germination; GO:0010033//response to organic substance; GO:0010099//regulation of photomorphogenesis; GO:0010468//regulation of gene expression; GO:0010476//gibberellin mediated signaling pathway; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010557//positive regulation of macromolecule biosynthetic process; GO:0010604//positive regulation of macromolecule metabolic process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010628//positive regulation of gene expression; GO:0010675//regulation of cellular carbohydrate metabolic process; GO:0010677//negative regulation of cellular carbohydrate metabolic process; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0023052//signaling; GO:0031323//regulation of cellular metabolic process; GO:0031324//negative regulation of cellular metabolic process; GO:0031325//positive regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031328//positive regulation of cellular biosynthetic process; GO:0032870//cellular response to hormone stimulus; GO:0032881//regulation of polysaccharide metabolic process; GO:0033993//response to lipid; GO:0042221//response to chemical; GO:0045893//positive regulation of transcription, DNA-templated; GO:0045912//negative regulation of carbohydrate metabolic process; GO:0045935//positive regulation of nucleobase-containing compound metabolic process; GO:0048518//positive regulation of biological process; GO:0048519//negative regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0048523//negative regulation of cellular process; GO:0048580//regulation of post-embryonic development; GO:0048582//positive regulation of post-embryonic development; GO:0048583//regulation of response to stimulus; GO:0048584//positive regulation of response to stimulus; GO:0048586//regulation of long-day photoperiodism, flowering; GO:0050789//regulation of biological process; GO:0050793//regulation of developmental process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051094//positive regulation of developmental process; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051173//positive regulation of nitrogen compound metabolic process; GO:0051239//regulation of multicellular organismal process; GO:0051240//positive regulation of multicellular organismal process; GO:0051246//regulation of protein metabolic process; GO:0051247//positive regulation of protein metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051254//positive regulation of RNA metabolic process; GO:0051716//cellular response to stimulus; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0070887//cellular response to chemical stimulus; GO:0071215//cellular response to abscisic acid stimulus; GO:0071229//cellular response to acid chemical; GO:0071310//cellular response to organic substance; GO:0071370//cellular response to gibberellin stimulus; GO:0071396//cellular response to lipid; GO:0071495//cellular response to endogenous stimulus; GO:0080090//regulation of primary metabolic process; GO:0097305//response to alcohol; GO:0097306//cellular response to alcohol; GO:1900140//regulation of seedling development; GO:1901700//response to oxygen-containing compound; GO:1901701//cellular response to oxygen-containing compound; GO:1902680//positive regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903508//positive regulation of nucleic acid-templated transcription; GO:2000026//regulation of multicellular organismal development; GO:2000028//regulation of photoperiodism, flowering; GO:2000030//regulation of response to red or far red light; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000241//regulation of reproductive process; GO:2000306//positive regulation of photomorphogenesis; GO:2000904//regulation of starch metabolic process; GO:2000905//negative regulation of starch metabolic process; GO:2001141//regulation of RNA biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005667//transcription factor complex; GO:0005737//cytoplasm; GO:0005829//cytosol; GO:0016602//CCAAT-binding factor complex; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044444//cytoplasmic part; GO:0044446//intracellular organelle part; GO:0044464//cell part; GO:0044798//nuclear transcription factor complex; GO:0090575//RNA polymerase II transcription factor complex | GO:0003674//molecular_function; GO:0003700//transcription factor activity, sequence-specific DNA binding
KEGG
K08066 | NFYC
NR
PON77287.1 Nuclear transcription factor Y subunit C [Parasponia andersonii]
Swiss-Prot
Q9SMP0.1 RecName: Full=Nuclear transcription factor Y subunit C-1; Short=AtNF-YC-1; AltName: Full=Transcriptional activator HAP5A [Arabidopsis thaliana]
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.