Anise · mRNA

Chr01.g02342.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

804
bp
Chr01:28,227,398–28,229,706
genomic location
Record overview

Feature identity

Identifier
Chr01.g02342.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
804 bp
Genomic location
Chr01:28,227,398–28,229,706
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010276688.1,K,[transcription factor]
Gene Ontology
transcription factor | GO:0000302//response to reactive oxygen species; GO:0001101//response to acid chemical; GO:0006355//regulation of transcription, DNA-templated; GO:0006357//regulation of transcription from RNA polymerase II promoter; GO:0006873//cellular ion homeostasis; GO:0006875//cellular metal ion homeostasis; GO:0006879//cellular iron ion homeostasis; GO:0006950//response to stress; GO:0006979//response to oxidative stress; GO:0007154//cell communication; GO:0008150//biological_process; GO:0009267//cellular response to starvation; GO:0009414//response to water deprivation; GO:0009415//response to water; GO:0009605//response to external stimulus; GO:0009628//response to abiotic stimulus; GO:0009719//response to endogenous stimulus; GO:0009723//response to ethylene; GO:0009725//response to hormone; GO:0009889//regulation of biosynthetic process; GO:0009891//positive regulation of biosynthetic process; GO:0009893//positive regulation of metabolic process; GO:0009966//regulation of signal transduction; GO:0009987//cellular process; GO:0009991//response to extracellular stimulus; GO:0010033//response to organic substance; GO:0010035//response to inorganic substance; GO:0010038//response to metal ion; GO:0010104//regulation of ethylene-activated signaling pathway; GO:0010106//cellular response to iron ion starvation; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010557//positive regulation of macromolecule biosynthetic process; GO:0010604//positive regulation of macromolecule metabolic process; GO:0010628//positive regulation of gene expression; GO:0010646//regulation of cell communication; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019725//cellular homeostasis; GO:0023051//regulation of signaling; GO:0030003//cellular cation homeostasis; GO:0031323//regulation of cellular metabolic process; GO:0031325//positive regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031328//positive regulation of cellular biosynthetic process; GO:0031667//response to nutrient levels; GO:0031668//cellular response to extracellular stimulus; GO:0031669//cellular response to nutrient levels; GO:0033554//cellular response to stress; GO:0034248//regulation of cellular amide metabolic process; GO:0034250//positive regulation of cellular amide metabolic process; GO:0042221//response to chemical; GO:0042493//response to drug; GO:0042592//homeostatic process; GO:0042594//response to starvation; GO:0043455//regulation of secondary metabolic process; GO:0045893//positive regulation of transcription, DNA-templated; GO:0045935//positive regulation of nucleobase-containing compound metabolic process; GO:0046685//response to arsenic-containing substance; GO:0046686//response to cadmium ion; GO:0046916//cellular transition metal ion homeostasis; GO:0048518//positive regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0048583//regulation of response to stimulus; GO:0048878//chemical homeostasis; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0050801//ion homeostasis; GO:0050896//response to stimulus; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051173//positive regulation of nitrogen compound metabolic process; GO:0051193//regulation of cofactor metabolic process; GO:0051194//positive regulation of cofactor metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051254//positive regulation of RNA metabolic process; GO:0051716//cellular response to stimulus; GO:0055065//metal ion homeostasis; GO:0055072//iron ion homeostasis; GO:0055076//transition metal ion homeostasis; GO:0055080//cation homeostasis; GO:0055082//cellular chemical homeostasis; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0065008//regulation of biological quality; GO:0070297//regulation of phosphorelay signal transduction system; GO:0071496//cellular response to external stimulus; GO:0071731//response to nitric oxide; GO:0080090//regulation of primary metabolic process; GO:0097366//response to bronchodilator; GO:0098771//inorganic ion homeostasis; GO:1900376//regulation of secondary metabolite biosynthetic process; GO:1900378//positive regulation of secondary metabolite biosynthetic process; GO:1900704//regulation of siderophore biosynthetic process; GO:1900706//positive regulation of siderophore biosynthetic process; GO:1901698//response to nitrogen compound; GO:1901700//response to oxygen-containing compound; GO:1902531//regulation of intracellular signal transduction; GO:1902680//positive regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903508//positive regulation of nucleic acid-templated transcription; GO:1990641//response to iron ion starvation; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005667//transcription factor complex; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044446//intracellular organelle part; GO:0044464//cell part; GO:0044798//nuclear transcription factor complex; GO:0090575//RNA polymerase II transcription factor complex | GO:0000976//transcription regulatory region sequence-specific DNA binding; GO:0000977//RNA polymerase II regulatory region sequence-specific DNA binding; GO:0001012//RNA polymerase II regulatory region DNA binding; GO:0001067//regulatory region nucleic acid binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003690//double-stranded DNA binding; GO:0003700//transcription factor activity, sequence-specific DNA binding; GO:0005488//binding; GO:0043565//sequence-specific DNA binding; GO:0044212//transcription regulatory region DNA binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding; GO:1990837//sequence-specific double-stranded DNA binding
NR
RWR79842.1 transcription factor ORG2 isoform X1 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q9M1K1.1 RecName: Full=Transcription factor ORG2; AltName: Full=Basic helix-loop-helix protein 38; Short=AtbHLH38; Short=bHLH 38; AltName: Full=OBP3-responsive gene 2; AltName: Full=Transcription factor EN 8; AltName: Full=bHLH transcription factor bHLH038 [Arabidopsis thaliana]
Biological context

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