Anise · mRNA

Chr01.g00559.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

564
bp
Chr01:5,876,850–5,878,737
genomic location
Record overview

Feature identity

Identifier
Chr01.g00559.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
564 bp
Genomic location
Chr01:5,876,850–5,878,737
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010248937.1,K,[High mobility group B protein]
Gene Ontology
High mobility group B protein | GO:0000741//karyogamy; GO:0006355//regulation of transcription, DNA-templated; GO:0006996//organelle organization; GO:0006997//nucleus organization; GO:0007275//multicellular organism development; GO:0008150//biological_process; GO:0009553//embryo sac development; GO:0009559//embryo sac central cell differentiation; GO:0009561//megagametogenesis; GO:0009889//regulation of biosynthetic process; GO:0009987//cellular process; GO:0010197//polar nucleus fusion; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0016043//cellular component organization; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0030154//cell differentiation; GO:0031323//regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0048229//gametophyte development; GO:0048284//organelle fusion; GO:0048856//anatomical structure development; GO:0048869//cellular developmental process; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0071840//cellular component organization or biogenesis; GO:0080090//regulation of primary metabolic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044424//intracellular part; GO:0044464//cell part | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003700//transcription factor activity, sequence-specific DNA binding; GO:0005488//binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K11296 | HMGB3
NR
RWR78721.1 high mobility group B protein 7 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q8LDF9.1 RecName: Full=High mobility group B protein 7; AltName: Full=Nucleosome/chromatin assembly factor group D 07; Short=Nucleosome/chromatin assembly factor group D 7; AltName: Full=Protein NUCLEAR FUSION DEFECTIVE 7 [Arabidopsis thaliana]
Biological context

Connected feature records

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