Feature identity
- Identifier
- PaHa_c278g00110.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,485 bp
- Genomic location
- unplaced_contig_278:16,471–18,250
- Strand
- −
Hass · mRNA
PaHa_c278g00110.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,485
- bp
- unplaced_contig_278:16,471–18,250
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c278g00110
- eggNOG
- Preferred name: STRAP | Seed ortholog: 357750.A0A2S6C2M3 | COG: S | eggNOG OG: WD40@131567|BER-20, WD40@2759|CQc-22
- Gene Ontology
- GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000380 alternative mRNA splicing, via spliceosome; GO:0000387 spliceosomal snRNP assembly; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0005102 signaling receptor binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0007476 imaginal disc-derived wing morphogenesis; GO:0010494 cytoplasmic stress granule; GO:0020022 acidocalcisome; GO:0022618 protein-RNA complex assembly; GO:0030154 cell differentiation; GO:0030277 maintenance of gastrointestinal epithelium; GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway; GO:0032797 SMN complex; GO:0034719 SMN-Sm protein complex; GO:1990447 U2 snRNP binding
- KEGG
- KO: K13137 | BRITE: 00001, 03041
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c278g00110.1-protein
derives_fromgenePaHa_c278g00110
CDS
part_ofPaHa_c278g00110.1-CDS-unplaced_contig_278-1787993825:16471..17499CDS
part_ofPaHa_c278g00110.1-CDS-unplaced_contig_278-1787993825:17699..17969CDS
part_ofPaHa_c278g00110.1-CDS-unplaced_contig_278-1787993825:18066..18250exon
part_ofPaHa_c278g00110.1-exon-unplaced_contig_278-1787993825:16471..17499exon
part_ofPaHa_c278g00110.1-exon-unplaced_contig_278-1787993825:17699..17969exon
part_ofPaHa_c278g00110.1-exon-unplaced_contig_278-1787993825:18066..18250