Anise · mRNA

Chr05.g41949.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

4,788
bp
Chr05:62,076,791–62,096,763
genomic location
Record overview

Feature identity

Identifier
Chr05.g41949.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
4,788 bp
Genomic location
Chr05:62,076,791–62,096,763
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010263344.1,K,[Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)]
Gene Ontology
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) | GO:0006355//regulation of transcription, DNA-templated; GO:0007154//cell communication; GO:0007165//signal transduction; GO:0007275//multicellular organism development; GO:0008150//biological_process; GO:0009314//response to radiation; GO:0009416//response to light stimulus; GO:0009605//response to external stimulus; GO:0009606//tropism; GO:0009628//response to abiotic stimulus; GO:0009629//response to gravity; GO:0009630//gravitropism; GO:0009637//response to blue light; GO:0009638//phototropism; GO:0009653//anatomical structure morphogenesis; GO:0009719//response to endogenous stimulus; GO:0009723//response to ethylene; GO:0009725//response to hormone; GO:0009733//response to auxin; GO:0009785//blue light signaling pathway; GO:0009791//post-embryonic development; GO:0009889//regulation of biosynthetic process; GO:0009891//positive regulation of biosynthetic process; GO:0009893//positive regulation of metabolic process; GO:0009987//cellular process; GO:0010015//root morphogenesis; GO:0010033//response to organic substance; GO:0010101//post-embryonic root morphogenesis; GO:0010102//lateral root morphogenesis; GO:0010311//lateral root formation; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010557//positive regulation of macromolecule biosynthetic process; GO:0010604//positive regulation of macromolecule metabolic process; GO:0010628//positive regulation of gene expression; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0022622//root system development; GO:0023052//signaling; GO:0030522//intracellular receptor signaling pathway; GO:0031323//regulation of cellular metabolic process; GO:0031325//positive regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031328//positive regulation of cellular biosynthetic process; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0042221//response to chemical; GO:0045893//positive regulation of transcription, DNA-templated; GO:0045935//positive regulation of nucleobase-containing compound metabolic process; GO:0048364//root development; GO:0048366//leaf development; GO:0048367//shoot system development; GO:0048518//positive regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0048527//lateral root development; GO:0048528//post-embryonic root development; GO:0048646//anatomical structure formation involved in morphogenesis; GO:0048731//system development; GO:0048827//phyllome development; GO:0048856//anatomical structure development; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051173//positive regulation of nitrogen compound metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051254//positive regulation of RNA metabolic process; GO:0051716//cellular response to stimulus; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0071214//cellular response to abiotic stimulus; GO:0071478//cellular response to radiation; GO:0071482//cellular response to light stimulus; GO:0071483//cellular response to blue light; GO:0080090//regulation of primary metabolic process; GO:0090696//post-embryonic plant organ development; GO:0090697//post-embryonic plant organ morphogenesis; GO:0090698//post-embryonic plant morphogenesis; GO:0099402//plant organ development; GO:1902680//positive regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903508//positive regulation of nucleic acid-templated transcription; GO:1905392//plant organ morphogenesis; GO:1905393//plant organ formation; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044424//intracellular part; GO:0044464//cell part | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003700//transcription factor activity, sequence-specific DNA binding; GO:0005488//binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
NR
RWR82674.1 auxin response factor 19-like protein isoform X1 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q0D9R7.2 RecName: Full=Auxin response factor 19; AltName: Full=OsARF7a [Oryza sativa Japonica Group]
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.