Feature identity
- Identifier
- PaHa_c291g00180.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,755 bp
- Genomic location
- unplaced_contig_291:32,333–34,159
- Strand
- +
Hass · mRNA
PaHa_c291g00180.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,755
- bp
- unplaced_contig_291:32,333–34,159
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c291g00180
- eggNOG
- Preferred name: CLP1 | Seed ortholog: 1182544.W9VI73 | COG: S | eggNOG OG: CLP1_N@131567|A-1, CLP1_P@131567|X-5, Clp1@2759|A-1
- Gene Ontology
- GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005829 cytosol; GO:0005848 mRNA cleavage stimulating factor complex; GO:0005849 mRNA cleavage factor complex; GO:0009410 response to xenobiotic stimulus; GO:0031124 mRNA 3'-end processing; GO:0051736 ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity; GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway
- KEGG
- EC: ec:2.7.1.78 | KO: K14399 | Pathway: 03015 | Module: M00132 | BRITE: 00001, 01000, 03019
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c291g00180.1-protein
derives_fromgenePaHa_c291g00180
CDS
part_ofPaHa_c291g00180.1-CDS-unplaced_contig_291-1787993825:32333..32689CDS
part_ofPaHa_c291g00180.1-CDS-unplaced_contig_291-1787993825:32762..34159exon
part_ofPaHa_c291g00180.1-exon-unplaced_contig_291-1787993825:32333..32689exon
part_ofPaHa_c291g00180.1-exon-unplaced_contig_291-1787993825:32762..34159