Hass · mRNA

PaHa_c300g00070.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

387
bp
unplaced_contig_300:9,066–9,805
genomic location
Record overview

Feature identity

Identifier
PaHa_c300g00070.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
387 bp
Genomic location
unplaced_contig_300:9,066–9,805
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: CRY2 | Seed ortholog: 1097556.R4X8P7 | COG: COG0415 | eggNOG OG: DNA_photolyase@131567|h-6, FAD_binding_7@131567|BP-8
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003684 damaged DNA binding; GO:0003690 double-stranded DNA binding; GO:0003697 single-stranded DNA binding; GO:0003712 transcription coregulator activity; GO:0003714 transcription corepressor activity; GO:0003904 deoxyribodipyrimidine photo-lyase activity; GO:0003913 DNA photolyase activity; GO:0003914 DNA (6-4) photolyase activity; GO:0004864 protein phosphatase inhibitor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006094 gluconeogenesis; GO:0006111 regulation of gluconeogenesis; GO:0006281 DNA repair; GO:0006290 pyrimidine dimer repair; GO:0006606 protein import into nucleus; GO:0007602 phototransduction; GO:0007623 circadian rhythm; GO:0009266 response to temperature stimulus; GO:0009411 response to UV; GO:0009416 response to light stimulus; GO:0009588 UV-A, blue light phototransduction; GO:0009637 response to blue light; GO:0009646 response to absence of light; GO:0009649 entrainment of circadian clock; GO:0009785 blue light signaling pathway; GO:0009881 photoreceptor activity; GO:0009882 blue light photoreceptor activity; GO:0010468 regulation of gene expression; GO:0014823 response to activity; GO:0016922 nuclear receptor binding; GO:0019900 kinase binding; GO:0019901 protein kinase binding; GO:0019902 phosphatase binding; GO:0019915 lipid storage; GO:0031397 negative regulation of protein ubiquitination; GO:0031398 positive regulation of protein ubiquitination; GO:0032868 response to insulin; GO:0032922 circadian regulation of gene expression; GO:0033762 response to glucagon; GO:0042332 gravitaxis; GO:0042542 response to hydrogen peroxide; GO:0042593 glucose homeostasis; GO:0042752 regulation of circadian rhythm; GO:0042754 negative regulation of circadian rhythm; GO:0042770 signal transduction in response to DNA damage; GO:0042826 histone deacetylase binding; GO:0043153 entrainment of circadian clock by photoperiod; GO:0045187 regulation of circadian sleep/wake cycle, sleep; GO:0045475 locomotor rhythm; GO:0045721 negative regulation of gluconeogenesis; GO:0045722 positive regulation of gluconeogenesis; GO:0045744 negative regulation of G protein-coupled receptor signaling pathway; GO:0045892 negative regulation of DNA-templated transcription; GO:0048512 circadian behavior; GO:0050660 flavin adenine dinucleotide binding; GO:0050958 magnetoreception; GO:0050980 detection of light stimulus involved in magnetoreception; GO:0070888 E-box binding; GO:0071000 response to magnetism; GO:0071482 cellular response to light stimulus; GO:0071949 FAD binding; GO:0140297 DNA-binding transcription factor binding; GO:2000001 regulation of DNA damage checkpoint; GO:2000118 regulation of sodium-dependent phosphate transport; GO:2000323 negative regulation of nuclear receptor-mediated glucocorticoid signaling pathway; GO:2000850 negative regulation of glucocorticoid secretion
KEGG
KO: K02295 | Pathway: 04710 | BRITE: 00001
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa_c300g00070.1-CDS-unplaced_contig_300-1787993825:9066..9321
part_of
CDSPaHa_c300g00070.1-CDS-unplaced_contig_300-1787993825:9675..9805
part_of
exonPaHa_c300g00070.1-exon-unplaced_contig_300-1787993825:9066..9321
part_of
exonPaHa_c300g00070.1-exon-unplaced_contig_300-1787993825:9675..9805
part_of