Anise · mRNA

Chr02.g19492.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

4,305
bp
Chr02:99,212,749–99,246,720
genomic location
Record overview

Feature identity

Identifier
Chr02.g19492.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
4,305 bp
Genomic location
Chr02:99,212,749–99,246,720
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010265282.1,K,[Transcription initiation factor TFIID subunit]
Gene Ontology
Transcription initiation factor TFIID subunit | GO:0006139//nucleobase-containing compound metabolic process; GO:0006351//transcription, DNA-templated; GO:0006352//DNA-templated transcription, initiation; GO:0006355//regulation of transcription, DNA-templated; GO:0006357//regulation of transcription from RNA polymerase II promoter; GO:0006366//transcription from RNA polymerase II promoter; GO:0006367//transcription initiation from RNA polymerase II promoter; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009889//regulation of biosynthetic process; GO:0009891//positive regulation of biosynthetic process; GO:0009893//positive regulation of metabolic process; GO:0009987//cellular process; GO:0010467//gene expression; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010557//positive regulation of macromolecule biosynthetic process; GO:0010604//positive regulation of macromolecule metabolic process; GO:0010628//positive regulation of gene expression; GO:0016043//cellular component organization; GO:0016070//RNA metabolic process; GO:0018130//heterocycle biosynthetic process; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019438//aromatic compound biosynthetic process; GO:0022607//cellular component assembly; GO:0031323//regulation of cellular metabolic process; GO:0031325//positive regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031328//positive regulation of cellular biosynthetic process; GO:0032774//RNA biosynthetic process; GO:0034622//cellular macromolecular complex assembly; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0043170//macromolecule metabolic process; GO:0043933//macromolecular complex subunit organization; GO:0044085//cellular component biogenesis; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0045893//positive regulation of transcription, DNA-templated; GO:0045935//positive regulation of nucleobase-containing compound metabolic process; GO:0045944//positive regulation of transcription from RNA polymerase II promoter; GO:0046483//heterocycle metabolic process; GO:0048518//positive regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0051123//RNA polymerase II transcriptional preinitiation complex assembly; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051173//positive regulation of nitrogen compound metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051254//positive regulation of RNA metabolic process; GO:0060255//regulation of macromolecule metabolic process; GO:0065003//macromolecular complex assembly; GO:0065004//protein-DNA complex assembly; GO:0065007//biological regulation; GO:0070897//DNA-templated transcriptional preinitiation complex assembly; GO:0071704//organic substance metabolic process; GO:0071824//protein-DNA complex subunit organization; GO:0071840//cellular component organization or biogenesis; GO:0080090//regulation of primary metabolic process; GO:0090304//nucleic acid metabolic process; GO:0097659//nucleic acid-templated transcription; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901576//organic substance biosynthetic process; GO:1902680//positive regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903508//positive regulation of nucleic acid-templated transcription; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0000428//DNA-directed RNA polymerase complex; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005667//transcription factor complex; GO:0005669//transcription factor TFIID complex; GO:0005911//cell-cell junction; GO:0009506//plasmodesma; GO:0016591//DNA-directed RNA polymerase II, holoenzyme; GO:0030054//cell junction; GO:0030880//RNA polymerase complex; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044446//intracellular organelle part; GO:0044451//nucleoplasm part; GO:0044464//cell part; GO:0044798//nuclear transcription factor complex; GO:0055029//nuclear DNA-directed RNA polymerase complex; GO:0055044//symplast; GO:0061695//transferase complex, transferring phosphorus-containing groups; GO:0070013//intracellular organelle lumen; GO:0090575//RNA polymerase II transcription factor complex; GO:1902494//catalytic complex; GO:1990234//transferase complex | GO:0000988//transcription factor activity, protein binding; GO:0000989//transcription factor activity, transcription factor binding; GO:0001067//regulatory region nucleic acid binding; GO:0001076//transcription factor activity, RNA polymerase II transcription factor binding; GO:0001129//RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly; GO:0001132//RNA polymerase II transcription factor activity, TBP-class protein binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003682//chromatin binding; GO:0005488//binding; GO:0043565//sequence-specific DNA binding; GO:0044212//transcription regulatory region DNA binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K03128 | TAF2
NR
RWR75019.1 transcription initiation factor TFIID subunit 2 isoform X1 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q8LPF0.1 RecName: Full=Transcription initiation factor TFIID subunit 2; AltName: Full=TBP-associated factor 2; Short=AtTAF2 [Arabidopsis thaliana]
Biological context

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