Anise · mRNA

Chr02.g17196.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,276
bp
Chr02:72,739,569–72,761,672
genomic location
Record overview

Feature identity

Identifier
Chr02.g17196.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
3,276 bp
Genomic location
Chr02:72,739,569–72,761,672
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
218851.Aquca_009_00281.1,L,[DNA-binding protein]
Gene Ontology
DNA-binding protein | GO:0000122//negative regulation of transcription from RNA polymerase II promoter; GO:0003008//system process; GO:0006355//regulation of transcription, DNA-templated; GO:0006357//regulation of transcription from RNA polymerase II promoter; GO:0006412//translation; GO:0006518//peptide metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006996//organelle organization; GO:0007275//multicellular organism development; GO:0007399//nervous system development; GO:0007417//central nervous system development; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009889//regulation of biosynthetic process; GO:0009890//negative regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0009987//cellular process; GO:0010467//gene expression; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010558//negative regulation of macromolecule biosynthetic process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010629//negative regulation of gene expression; GO:0016043//cellular component organization; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019538//protein metabolic process; GO:0021510//spinal cord development; GO:0021515//cell differentiation in spinal cord; GO:0021517//ventral spinal cord development; GO:0021522//spinal cord motor neuron differentiation; GO:0021953//central nervous system neuron differentiation; GO:0022008//neurogenesis; GO:0022607//cellular component assembly; GO:0030154//cell differentiation; GO:0030182//neuron differentiation; GO:0031323//regulation of cellular metabolic process; GO:0031324//negative regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031327//negative regulation of cellular biosynthetic process; GO:0032392//DNA geometric change; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0032508//DNA duplex unwinding; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0043043//peptide biosynthetic process; GO:0043170//macromolecule metabolic process; GO:0043603//cellular amide metabolic process; GO:0043604//amide biosynthetic process; GO:0043933//macromolecular complex subunit organization; GO:0044085//cellular component biogenesis; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044267//cellular protein metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0045892//negative regulation of transcription, DNA-templated; GO:0045934//negative regulation of nucleobase-containing compound metabolic process; GO:0048513//animal organ development; GO:0048519//negative regulation of biological process; GO:0048523//negative regulation of cellular process; GO:0048699//generation of neurons; GO:0048731//system development; GO:0048856//anatomical structure development; GO:0048869//cellular developmental process; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0050877//neurological system process; GO:0050905//neuromuscular process; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051172//negative regulation of nitrogen compound metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051253//negative regulation of RNA metabolic process; GO:0051259//protein oligomerization; GO:0051260//protein homooligomerization; GO:0051276//chromosome organization; GO:0060255//regulation of macromolecule metabolic process; GO:0065003//macromolecular complex assembly; GO:0065007//biological regulation; GO:0071103//DNA conformation change; GO:0071704//organic substance metabolic process; GO:0071840//cellular component organization or biogenesis; GO:0080090//regulation of primary metabolic process; GO:1901564//organonitrogen compound metabolic process; GO:1901566//organonitrogen compound biosynthetic process; GO:1901576//organic substance biosynthetic process; GO:1902679//negative regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903507//negative regulation of nucleic acid-templated transcription; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000113//negative regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005737//cytoplasm; GO:0030424//axon; GO:0030426//growth cone; GO:0030427//site of polarized growth; GO:0032991//macromolecular complex; GO:0033267//axon part; GO:0036477//somatodendritic compartment; GO:0042995//cell projection; GO:0043005//neuron projection; GO:0043025//neuronal cell body; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044297//cell body; GO:0044424//intracellular part; GO:0044444//cytoplasmic part; GO:0044463//cell projection part; GO:0044464//cell part; GO:0048471//perinuclear region of cytoplasm; GO:0097458//neuron part; GO:0120025//plasma membrane bounded cell projection; GO:1990904//ribonucleoprotein complex | GO:0000049//tRNA binding; GO:0000166//nucleotide binding; GO:0000976//transcription regulatory region sequence-specific DNA binding; GO:0000977//RNA polymerase II regulatory region sequence-specific DNA binding; GO:0000981//RNA polymerase II transcription factor activity, sequence-specific DNA binding; GO:0000982//transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding; GO:0001012//RNA polymerase II regulatory region DNA binding; GO:0001067//regulatory region nucleic acid binding; GO:0001078//transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding; GO:0001227//transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003678//DNA helicase activity; GO:0003690//double-stranded DNA binding; GO:0003697//single-stranded DNA binding; GO:0003700//transcription factor activity, sequence-specific DNA binding; GO:0003723//RNA binding; GO:0003724//RNA helicase activity; GO:0003824//catalytic activity; GO:0004003//ATP-dependent DNA helicase activity; GO:0004004//ATP-dependent RNA helicase activity; GO:0004386//helicase activity; GO:0005488//binding; GO:0005515//protein binding; GO:0005524//ATP binding; GO:0008026//ATP-dependent helicase activity; GO:0008094//DNA-dependent ATPase activity; GO:0008134//transcription factor binding; GO:0008144//drug binding; GO:0008186//RNA-dependent ATPase activity; GO:0016462//pyrophosphatase activity; GO:0016787//hydrolase activity; GO:0016817//hydrolase activity, acting on acid anhydrides; GO:0016818//hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; GO:0016887//ATPase activity; GO:0017076//purine nucleotide binding; GO:0017111//nucleoside-triphosphatase activity; GO:0030554//adenyl nucleotide binding; GO:0032553//ribonucleotide binding; GO:0032555//purine ribonucleotide binding; GO:0032559//adenyl ribonucleotide binding; GO:0032574//5'-3' RNA helicase activity; GO:0032575//ATP-dependent 5'-3' RNA helicase activity; GO:0035639//purine ribonucleoside triphosphate binding; GO:0036094//small molecule binding; GO:0042623//ATPase activity, coupled; GO:0043021//ribonucleoprotein complex binding; GO:0043022//ribosome binding; GO:0043139//5'-3' DNA helicase activity; GO:0043141//ATP-dependent 5'-3' DNA helicase activity; GO:0043167//ion binding; GO:0043168//anion binding; GO:0043565//sequence-specific DNA binding; GO:0043621//protein self-association; GO:0044212//transcription regulatory region DNA binding; GO:0044877//macromolecular complex binding; GO:0070035//purine NTP-dependent helicase activity; GO:0097159//organic cyclic compound binding; GO:0097367//carbohydrate derivative binding; GO:1901265//nucleoside phosphate binding; GO:1901363//heterocyclic compound binding; GO:1990837//sequence-specific double-stranded DNA binding; GO:1990955//G-rich single-stranded DNA binding
KEGG
K19036 | IGHMBP2
NR
RWR73779.1 DNA-binding protein SMUBP-2 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q60560.1 RecName: Full=DNA-binding protein SMUBP-2; AltName: Full=ATP-dependent helicase IGHMBP2; AltName: Full=Immunoglobulin mu-binding protein 2; AltName: Full=Insulin II gene enhancer-binding protein; AltName: Full=RIPE3B-binding complex 3B2 p110 subunit; Short=RIP-1 [Mesocricetus auratus]
Biological context

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