Feature identity
- Identifier
- PaHa_c322g00120.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,278 bp
- Genomic location
- unplaced_contig_322:18,980–20,804
- Strand
- −
Hass · mRNA
PaHa_c322g00120.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,278
- bp
- unplaced_contig_322:18,980–20,804
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c322g00120
- eggNOG
- Preferred name: TFC7 | Seed ortholog: 329885.A0A4V5N6Y2 | COG: COG0406 | eggNOG OG: His_Phos_1@131567|Mw-18
- Gene Ontology
- GO:0000127 transcription factor TFIIIC complex; GO:0000995 RNA polymerase III general transcription initiation factor activity; GO:0001002 RNA polymerase III type 1 promoter sequence-specific DNA binding; GO:0001003 RNA polymerase III type 2 promoter sequence-specific DNA binding; GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006383 transcription by RNA polymerase III; GO:0006384 transcription initiation at RNA polymerase III promoter; GO:0008150 biological_process; GO:0008301 DNA binding, bending; GO:0016311 dephosphorylation; GO:0016791 phosphatase activity; GO:0042791 5S class rRNA transcription by RNA polymerase III
- KEGG
- EC: ec:2.8.1.14, ec:3.1.3.48 | KO: K15206 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c322g00120.1-protein
derives_fromgenePaHa_c322g00120
CDS
part_ofPaHa_c322g00120.1-CDS-unplaced_contig_322-1787993825:18980..19145CDS
part_ofPaHa_c322g00120.1-CDS-unplaced_contig_322-1787993825:19245..19334CDS
part_ofPaHa_c322g00120.1-CDS-unplaced_contig_322-1787993825:19465..20260CDS
part_ofPaHa_c322g00120.1-CDS-unplaced_contig_322-1787993825:20579..20804exon
part_ofPaHa_c322g00120.1-exon-unplaced_contig_322-1787993825:18980..19145exon
part_ofPaHa_c322g00120.1-exon-unplaced_contig_322-1787993825:19245..19334exon
part_ofPaHa_c322g00120.1-exon-unplaced_contig_322-1787993825:19465..20260exon
part_ofPaHa_c322g00120.1-exon-unplaced_contig_322-1787993825:20579..20804