Feature identity
- Identifier
- PaHa_c410g00200.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,917 bp
- Genomic location
- unplaced_contig_410:24,212–26,364
- Strand
- +
Hass · mRNA
PaHa_c410g00200.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,917
- bp
- unplaced_contig_410:24,212–26,364
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c410g00200
- eggNOG
- Preferred name: rlcA | Seed ortholog: 1016849.A0A0D1YCJ3 | COG: S | eggNOG OG: PHD@131567|A-1*, PHD@2759|Dw-9, SPOC@131567|A-1*, SPOC@2759|N-4!, TFIIS_M@131567|A-1*, TFIIS_M@2759|B-2
- Gene Ontology
- GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003711 transcription elongation factor activity; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0008270 zinc ion binding; GO:0034244 negative regulation of transcription elongation by RNA polymerase II; GO:0140002 histone H3K4me3 reader activity
- KEGG
- EC: ec:6.1.1.6 | KO: K04567 | Pathway: 00970 | BRITE: 00001, 01000, 01007, 01613, 03016
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c410g00200.1-protein
derives_fromgenePaHa_c410g00200
CDS
part_ofPaHa_c410g00200.1-CDS-unplaced_contig_410-1787993825:24212..24352CDS
part_ofPaHa_c410g00200.1-CDS-unplaced_contig_410-1787993825:24430..24677CDS
part_ofPaHa_c410g00200.1-CDS-unplaced_contig_410-1787993825:24792..25350CDS
part_ofPaHa_c410g00200.1-CDS-unplaced_contig_410-1787993825:25396..26364exon
part_ofPaHa_c410g00200.1-exon-unplaced_contig_410-1787993825:24212..24352exon
part_ofPaHa_c410g00200.1-exon-unplaced_contig_410-1787993825:24430..24677exon
part_ofPaHa_c410g00200.1-exon-unplaced_contig_410-1787993825:24792..25350exon
part_ofPaHa_c410g00200.1-exon-unplaced_contig_410-1787993825:25396..26364