Feature identity
- Identifier
- PaHa01g04040.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,190 bp
- Genomic location
- 1:5,181,122–5,191,302
- Strand
- +
Hass · mRNA
PaHa01g04040.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,190
- bp
- 1:5,181,122–5,191,302
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g04040
- eggNOG
- Preferred name: ARF1 | Seed ortholog: 337451.A0A3S3NFK5 | COG: S | eggNOG OG: AUX_IAA@131567|A-1*, AUX_IAA@2759|AW-7, AUX_IAA@3193|qd-19, AUX_IAA@3398|Amh-25, Auxin_resp@131567|A-1*, Auxin_resp@2759|N-4, Auxin_resp@3398|BT-10, B3@131221|yd-19, B3@131567|A-1*, B3@3193|AHu-20, B3@33090|Id-12, B3@3398|BlQ-27
- Gene Ontology
- GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0008219 cell death; GO:0009733 response to auxin; GO:0010150 leaf senescence; GO:0042802 identical protein binding; GO:0043565 sequence-specific DNA binding; GO:0045892 negative regulation of DNA-templated transcription
- KEGG
- KO: K14486 | Pathway: 04075 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g04040.1-protein
derives_frommRNAPaHa01g04040.1
mRNAPaHa01g04040.1
part_ofgenePaHa01g04040
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5181122..5181167mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5182009..5182124mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5184301..5184396mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5184551..5184607mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5184988..5185140mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5185256..5185340mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5185927..5186017mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5186108..5186272mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5187019..5187138mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5187229..5187304mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5187618..5187777mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5188038..5188549mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5189610..5189800mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5190544..5190734mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5191051..5191082mRNAPaHa01g04040.1
CDS
part_ofPaHa01g04040.1-CDS-1-1787993825:5191204..5191302mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5181122..5181167mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5182009..5182124mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5184301..5184396mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5184551..5184607mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5184988..5185140mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5185256..5185340mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5185927..5186017mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5186108..5186272mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5187019..5187138mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5187229..5187304mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5187618..5187777mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5188038..5188549mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5189610..5189800mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5190544..5190734mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5191051..5191082mRNAPaHa01g04040.1
exon
part_ofPaHa01g04040.1-exon-1-1787993825:5191204..5191302mRNAPaHa01g04040.1
