Hass · mRNA

PaHa01g42070.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,262
bp
1:97,731,661–97,768,966
genomic location
Record overview

Feature identity

Identifier
PaHa01g42070.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,262 bp
Genomic location
1:97,731,661–97,768,966
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: TEF-C | Seed ortholog: 337451.A0A443NSP1 | COG: S | eggNOG OG: GTP_EFTU@131567|Ah-10, GTP_EFTU_D3@131567|F-3, GTP_EFTU_D3@2759|p-6
Gene Ontology
GO:0000177 cytoplasmic exosome (RNase complex); GO:0000956 nuclear-transcribed mRNA catabolic process; GO:0002184 cytoplasmic translational termination; GO:0003747 translation release factor activity; GO:0003924 GTPase activity; GO:0005515 protein binding; GO:0005525 GTP binding; GO:0005575 cellular_component; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006412 translation; GO:0007165 signal transduction; GO:0007291 sperm individualization; GO:0008150 biological_process; GO:0016020 membrane; GO:0016441 post-transcriptional gene silencing; GO:0022626 cytosolic ribosome; GO:0030968 endoplasmic reticulum unfolded protein response; GO:0032790 ribosome disassembly; GO:0043022 ribosome binding; GO:0045089 positive regulation of innate immune response; GO:0045727 positive regulation of translation; GO:0045948 positive regulation of translational initiation; GO:0048137 spermatocyte division; GO:0050829 defense response to Gram-negative bacterium; GO:0070062 extracellular exosome; GO:0070651 nonfunctional rRNA decay; GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay; GO:0072344 rescue of stalled cytosolic ribosome; GO:0097014 ciliary plasm; GO:1990533 Dom34-Hbs1 complex
KEGG
KO: K14416 | Pathway: 03015 | BRITE: 00001, 03019
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa01g42070.1-CDS-1-1787993825:97731661..97731711
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97731911..97731979
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97732169..97732261
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97732901..97733035
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97733123..97733368
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97739404..97739572
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97743356..97743441
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97743535..97743846
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97743952..97744062
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97744181..97744512
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97755373..97755453
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97755685..97755909
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97758405..97758563
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97765516..97765612
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97765698..97765737
part_of
CDSPaHa01g42070.1-CDS-1-1787993825:97768911..97768966
part_of
exonPaHa01g42070.1-exon-1-1787993825:97731661..97731711
part_of
exonPaHa01g42070.1-exon-1-1787993825:97731911..97731979
part_of
exonPaHa01g42070.1-exon-1-1787993825:97732169..97732261
part_of
exonPaHa01g42070.1-exon-1-1787993825:97732901..97733035
part_of
exonPaHa01g42070.1-exon-1-1787993825:97733123..97733368
part_of
exonPaHa01g42070.1-exon-1-1787993825:97739404..97739572
part_of
exonPaHa01g42070.1-exon-1-1787993825:97743356..97743441
part_of
exonPaHa01g42070.1-exon-1-1787993825:97743535..97743846
part_of
exonPaHa01g42070.1-exon-1-1787993825:97743952..97744062
part_of
exonPaHa01g42070.1-exon-1-1787993825:97744181..97744512
part_of
exonPaHa01g42070.1-exon-1-1787993825:97755373..97755453
part_of
exonPaHa01g42070.1-exon-1-1787993825:97755685..97755909
part_of
exonPaHa01g42070.1-exon-1-1787993825:97758405..97758563
part_of
exonPaHa01g42070.1-exon-1-1787993825:97765516..97765612
part_of
exonPaHa01g42070.1-exon-1-1787993825:97765698..97765737
part_of
exonPaHa01g42070.1-exon-1-1787993825:97768911..97768966
part_of