Feature identity
- Identifier
- PaHa01g04340.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,077 bp
- Genomic location
- 1:5,566,033–5,568,784
- Strand
- −
Hass · mRNA
PaHa01g04340.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,077
- bp
- 1:5,566,033–5,568,784
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g04340
- eggNOG
- Preferred name: OPR2 | Seed ortholog: 337451.A0A3S3Q3K2 | COG: S | eggNOG OG: Oxidored_FMN@131567|BRM-22, Oxidored_FMN@3193|LDZ-39, Oxidored_FMN@3398|SZY-50!
- Gene Ontology
- GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005829 cytosol; GO:0006629 lipid metabolic process; GO:0008150 biological_process; GO:0009611 response to wounding; GO:0009695 jasmonic acid biosynthetic process; GO:0009751 response to salicylic acid; GO:0010181 FMN binding; GO:0016629 12-oxophytodienoate reductase activity; GO:0031407 oxylipin metabolic process; GO:0071456 cellular response to hypoxia
- KEGG
- EC: ec:1.3.1.42 | KO: K05894 | Pathway: 00592, 01100, 01110 | Module: M00113 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g04340.1-protein
derives_frommRNAPaHa01g04340.1
mRNAPaHa01g04340.1
part_ofgenePaHa01g04340
CDS
part_ofPaHa01g04340.1-CDS-1-1787993825:5566033..5566625mRNAPaHa01g04340.1
CDS
part_ofPaHa01g04340.1-CDS-1-1787993825:5566893..5567045mRNAPaHa01g04340.1
CDS
part_ofPaHa01g04340.1-CDS-1-1787993825:5567482..5567612mRNAPaHa01g04340.1
CDS
part_ofPaHa01g04340.1-CDS-1-1787993825:5568039..5568179mRNAPaHa01g04340.1
CDS
part_ofPaHa01g04340.1-CDS-1-1787993825:5568726..5568784mRNAPaHa01g04340.1
exon
part_ofPaHa01g04340.1-exon-1-1787993825:5566033..5566625mRNAPaHa01g04340.1
exon
part_ofPaHa01g04340.1-exon-1-1787993825:5566893..5567045mRNAPaHa01g04340.1
exon
part_ofPaHa01g04340.1-exon-1-1787993825:5567482..5567612mRNAPaHa01g04340.1
exon
part_ofPaHa01g04340.1-exon-1-1787993825:5568039..5568179mRNAPaHa01g04340.1
exon
part_ofPaHa01g04340.1-exon-1-1787993825:5568726..5568784mRNAPaHa01g04340.1
