Feature identity
- Identifier
- PaHa02g04040.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,025 bp
- Genomic location
- 2:6,789,853–6,801,549
- Strand
- −
Hass · mRNA
PaHa02g04040.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,025
- bp
- 2:6,789,853–6,801,549
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g04040
- eggNOG
- Preferred name: GL3 | Seed ortholog: 337451.A0A3S4N375 | COG: S | eggNOG OG: HLH@131567|Zg-14!, HLH@3193|Jox-34, HLH@33090|AAF-17, HLH@35493|Aps-20, bHLH-MYC_N@131567|A-1*, bHLH-MYC_N@2759|C-2, bHLH-MYC_N@3193|Ab-9, bHLH-MYC_N@33090|r-7, bHLH-MYC_N@3398|Ci-12
- Gene Ontology
- GO:0001708 cell fate specification; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009867 jasmonic acid mediated signaling pathway; GO:0010026 trichome differentiation; GO:0010091 trichome branching; GO:0031542 positive regulation of anthocyanin biosynthetic process; GO:0090628 plant epidermal cell fate specification
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g04040.1-protein
derives_frommRNAPaHa02g04040.1
mRNAPaHa02g04040.1
part_ofgenePaHa02g04040
CDS
part_ofPaHa02g04040.1-CDS-2-1787993825:6789853..6789924mRNAPaHa02g04040.1
CDS
part_ofPaHa02g04040.1-CDS-2-1787993825:6790338..6790778mRNAPaHa02g04040.1
CDS
part_ofPaHa02g04040.1-CDS-2-1787993825:6791666..6792619mRNAPaHa02g04040.1
CDS
part_ofPaHa02g04040.1-CDS-2-1787993825:6793444..6793500mRNAPaHa02g04040.1
CDS
part_ofPaHa02g04040.1-CDS-2-1787993825:6796212..6796226mRNAPaHa02g04040.1
CDS
part_ofPaHa02g04040.1-CDS-2-1787993825:6796395..6796491mRNAPaHa02g04040.1
CDS
part_ofPaHa02g04040.1-CDS-2-1787993825:6798891..6799151mRNAPaHa02g04040.1
CDS
part_ofPaHa02g04040.1-CDS-2-1787993825:6801422..6801549mRNAPaHa02g04040.1
exon
part_ofPaHa02g04040.1-exon-2-1787993825:6789853..6789924mRNAPaHa02g04040.1
exon
part_ofPaHa02g04040.1-exon-2-1787993825:6790338..6790778mRNAPaHa02g04040.1
exon
part_ofPaHa02g04040.1-exon-2-1787993825:6791666..6792619mRNAPaHa02g04040.1
exon
part_ofPaHa02g04040.1-exon-2-1787993825:6793444..6793500mRNAPaHa02g04040.1
exon
part_ofPaHa02g04040.1-exon-2-1787993825:6796212..6796226mRNAPaHa02g04040.1
exon
part_ofPaHa02g04040.1-exon-2-1787993825:6796395..6796491mRNAPaHa02g04040.1
exon
part_ofPaHa02g04040.1-exon-2-1787993825:6798891..6799151mRNAPaHa02g04040.1
exon
part_ofPaHa02g04040.1-exon-2-1787993825:6801422..6801549mRNAPaHa02g04040.1
