Feature identity
- Identifier
- PaHa02g12980.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 726 bp
- Genomic location
- 2:22,130,619–22,164,270
- Strand
- −
Hass · mRNA
PaHa02g12980.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 726
- bp
- 2:22,130,619–22,164,270
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g12980
- eggNOG
- Preferred name: CMB1 | Seed ortholog: 337451.A0A3S3M410 | COG: S | eggNOG OG: K-box@131567|A-1*, K-box@2759|Ah-7, K-box@3398|bX-16, SRF-TF@131567|A-1*, SRF-TF@2759|C-2!, SRF-TF@3193|jV-20, SRF-TF@3398|DMa-32, SRF-TF@35493|bP-19
- Gene Ontology
- GO:0003677 DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0008134 transcription factor binding; GO:0010022 meristem determinacy; GO:0010093 specification of floral organ identity; GO:0010582 floral meristem determinacy; GO:0046983 protein dimerization activity; GO:0048509 regulation of meristem development
- KEGG
- KO: K09264 | Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g12980.1-protein
derives_frommRNAPaHa02g12980.1
mRNAPaHa02g12980.1
part_ofgenePaHa02g12980
CDS
part_ofPaHa02g12980.1-CDS-2-1787993825:22130619..22130703mRNAPaHa02g12980.1
CDS
part_ofPaHa02g12980.1-CDS-2-1787993825:22132015..22132151mRNAPaHa02g12980.1
CDS
part_ofPaHa02g12980.1-CDS-2-1787993825:22135191..22135232mRNAPaHa02g12980.1
CDS
part_ofPaHa02g12980.1-CDS-2-1787993825:22135352..22135393mRNAPaHa02g12980.1
CDS
part_ofPaHa02g12980.1-CDS-2-1787993825:22138975..22139074mRNAPaHa02g12980.1
CDS
part_ofPaHa02g12980.1-CDS-2-1787993825:22145528..22145589mRNAPaHa02g12980.1
CDS
part_ofPaHa02g12980.1-CDS-2-1787993825:22147369..22147441mRNAPaHa02g12980.1
CDS
part_ofPaHa02g12980.1-CDS-2-1787993825:22164086..22164270mRNAPaHa02g12980.1
exon
part_ofPaHa02g12980.1-exon-2-1787993825:22130619..22130703mRNAPaHa02g12980.1
exon
part_ofPaHa02g12980.1-exon-2-1787993825:22132015..22132151mRNAPaHa02g12980.1
exon
part_ofPaHa02g12980.1-exon-2-1787993825:22135191..22135232mRNAPaHa02g12980.1
exon
part_ofPaHa02g12980.1-exon-2-1787993825:22135352..22135393mRNAPaHa02g12980.1
exon
part_ofPaHa02g12980.1-exon-2-1787993825:22138975..22139074mRNAPaHa02g12980.1
exon
part_ofPaHa02g12980.1-exon-2-1787993825:22145528..22145589mRNAPaHa02g12980.1
exon
part_ofPaHa02g12980.1-exon-2-1787993825:22147369..22147441mRNAPaHa02g12980.1
exon
part_ofPaHa02g12980.1-exon-2-1787993825:22164086..22164270mRNAPaHa02g12980.1
