Hass · mRNA

PaHa01g00450.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

741
bp
1:721,568–725,562
genomic location
Record overview

Feature identity

Identifier
PaHa01g00450.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
741 bp
Genomic location
1:721,568–725,562
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104597283 | Seed ortholog: 337451.A0A443NIR3 | COG: S | eggNOG OG: HLH@131567|BWE-22, HLH@3398|DaR-27
Gene Ontology
GO:0000976 transcription cis-regulatory region binding; GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0042802 identical protein binding; GO:0043565 sequence-specific DNA binding; GO:0046982 protein heterodimerization activity
KEGG
KO: K09114, K09115 | BRITE: 00001, 03000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa01g00450.1-CDS-1-1787993825:721568..721611
part_of
CDSPaHa01g00450.1-CDS-1-1787993825:723114..723232
part_of
CDSPaHa01g00450.1-CDS-1-1787993825:724304..724431
part_of
CDSPaHa01g00450.1-CDS-1-1787993825:725113..725562
part_of
exonPaHa01g00450.1-exon-1-1787993825:721568..721611
part_of
exonPaHa01g00450.1-exon-1-1787993825:723114..723232
part_of
exonPaHa01g00450.1-exon-1-1787993825:724304..724431
part_of
exonPaHa01g00450.1-exon-1-1787993825:725113..725562
part_of