Feature identity
- Identifier
- PaHa01g05490.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 651 bp
- Genomic location
- 1:7,063,664–7,092,259
- Strand
- −
Hass · mRNA
PaHa01g05490.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 651
- bp
- 1:7,063,664–7,092,259
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g05490
- eggNOG
- Preferred name: LOC110796325 | Seed ortholog: 337451.A0A443NJV4 | COG: S | eggNOG OG: BAH@131567|A-1*, BAH@2759|BM-9, BAH@3398|AoM-24, PHD@131567|A-1*, PHD@2759|Az-7
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009791 post-embryonic development; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0045814 negative regulation of gene expression, epigenetic; GO:0061628 histone H3K27me3 reader activity; GO:0140002 histone H3K4me3 reader activity; GO:2000028 regulation of photoperiodism, flowering
- KEGG
- EC: ec:2.7.7.7 | KO: K25868 | BRITE: 00001, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g05490.1-protein
derives_frommRNAPaHa01g05490.1
mRNAPaHa01g05490.1
part_ofgenePaHa01g05490
CDS
part_ofPaHa01g05490.1-CDS-1-1787993825:7063664..7063690mRNAPaHa01g05490.1
CDS
part_ofPaHa01g05490.1-CDS-1-1787993825:7064623..7064758mRNAPaHa01g05490.1
CDS
part_ofPaHa01g05490.1-CDS-1-1787993825:7090862..7090930mRNAPaHa01g05490.1
CDS
part_ofPaHa01g05490.1-CDS-1-1787993825:7091628..7091973mRNAPaHa01g05490.1
CDS
part_ofPaHa01g05490.1-CDS-1-1787993825:7092187..7092259mRNAPaHa01g05490.1
exon
part_ofPaHa01g05490.1-exon-1-1787993825:7063664..7063690mRNAPaHa01g05490.1
exon
part_ofPaHa01g05490.1-exon-1-1787993825:7064623..7064758mRNAPaHa01g05490.1
exon
part_ofPaHa01g05490.1-exon-1-1787993825:7090862..7090930mRNAPaHa01g05490.1
exon
part_ofPaHa01g05490.1-exon-1-1787993825:7091628..7091973mRNAPaHa01g05490.1
exon
part_ofPaHa01g05490.1-exon-1-1787993825:7092187..7092259mRNAPaHa01g05490.1
