Hass · mRNA

PaHa02g17980.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,473
bp
2:37,740,688–37,773,770
genomic location
Record overview

Feature identity

Identifier
PaHa02g17980.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,473 bp
Genomic location
2:37,740,688–37,773,770
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: EBP3501 | Seed ortholog: 337451.A0A443N3R6 | COG: S | eggNOG OG: BAH@131567|A-1*, BAH@2759|BM-9
Gene Ontology
GO:0000785 chromatin; GO:0000976 transcription cis-regulatory region binding; GO:0001217 DNA-binding transcription repressor activity; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005677 chromatin silencing complex; GO:0005694 chromosome; GO:0005739 mitochondrion; GO:0005829 cytosol; GO:0006325 chromatin organization; GO:0006338 chromatin remodeling; GO:0007560 imaginal disc morphogenesis; GO:0007626 locomotory behavior; GO:0009791 post-embryonic development; GO:0009845 seed germination; GO:0010220 positive regulation of vernalization response; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0010468 regulation of gene expression; GO:0030182 neuron differentiation; GO:0031453 positive regulation of heterochromatin formation; GO:0031507 heterochromatin formation; GO:0031965 nuclear membrane; GO:0034244 negative regulation of transcription elongation by RNA polymerase II; GO:0035363 histone locus body; GO:0045814 negative regulation of gene expression, epigenetic; GO:0045892 negative regulation of DNA-templated transcription; GO:0048579 negative regulation of long-day photoperiodism, flowering; GO:0061628 histone H3K27me3 reader activity; GO:0062072 histone H3K9me2/3 reader activity; GO:0071168 protein localization to chromatin; GO:0140002 histone H3K4me3 reader activity; GO:0140463 chromatin-protein adaptor activity; GO:0140566 histone reader activity; GO:0140678 molecular function inhibitor activity; GO:0141005 transposable element silencing by heterochromatin formation; GO:2000028 regulation of photoperiodism, flowering
KEGG
EC: ec:2.7.7.7 | KO: K25868 | BRITE: 00001, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa02g17980.1-CDS-2-1787993825:37740688..37740711
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37740901..37740992
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37741087..37741432
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37754636..37754725
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37754894..37754947
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37755761..37755814
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37760612..37760697
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37760844..37760964
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37761109..37761228
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37761329..37761404
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37764323..37764378
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37764528..37764638
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37764774..37764893
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37765000..37765104
part_of
CDSPaHa02g17980.1-CDS-2-1787993825:37773753..37773770
part_of
exonPaHa02g17980.1-exon-2-1787993825:37740688..37740711
part_of
exonPaHa02g17980.1-exon-2-1787993825:37740901..37740992
part_of
exonPaHa02g17980.1-exon-2-1787993825:37741087..37741432
part_of
exonPaHa02g17980.1-exon-2-1787993825:37754636..37754725
part_of
exonPaHa02g17980.1-exon-2-1787993825:37754894..37754947
part_of
exonPaHa02g17980.1-exon-2-1787993825:37755761..37755814
part_of
exonPaHa02g17980.1-exon-2-1787993825:37760612..37760697
part_of
exonPaHa02g17980.1-exon-2-1787993825:37760844..37760964
part_of
exonPaHa02g17980.1-exon-2-1787993825:37761109..37761228
part_of
exonPaHa02g17980.1-exon-2-1787993825:37761329..37761404
part_of
exonPaHa02g17980.1-exon-2-1787993825:37764323..37764378
part_of
exonPaHa02g17980.1-exon-2-1787993825:37764528..37764638
part_of
exonPaHa02g17980.1-exon-2-1787993825:37764774..37764893
part_of
exonPaHa02g17980.1-exon-2-1787993825:37765000..37765104
part_of
exonPaHa02g17980.1-exon-2-1787993825:37773753..37773770
part_of