Feature identity
- Identifier
- PaHa01g21260.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,575 bp
- Genomic location
- 1:41,965,850–42,059,797
- Strand
- −
Hass · mRNA
PaHa01g21260.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,575
- bp
- 1:41,965,850–42,059,797
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g21260
- eggNOG
- Preferred name: SYN2 | Seed ortholog: 4432.A0A1U7Z8W5 | COG: S | eggNOG OG: Rad21_Rec8@131567|AQ-7, Rad21_Rec8@33090|Vq-22, Rad21_Rec8_N@131567|A-1*, Rad21_Rec8_N@2759|Ae-8, Rad21_Rec8_N@33090|NV-16, Rad21_Rec8_N@3398|SD-18
- Gene Ontology
- GO:0000278 mitotic cell cycle; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003684 damaged DNA binding; GO:0003690 double-stranded DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006302 double-strand break repair; GO:0019901 protein kinase binding; GO:0043565 sequence-specific DNA binding; GO:0061776 ATP-dependent topological DNA co-entrapment activity; GO:0106222 lncRNA binding; GO:0140297 DNA-binding transcription factor binding
- KEGG
- KO: K06670 | Pathway: 04110, 04111, 04113 | BRITE: 00001, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g21260.1-protein
derives_frommRNAPaHa01g21260.1
mRNAPaHa01g21260.1
part_ofgenePaHa01g21260
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:41965850..41965945mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:41993040..41993157mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:41993261..41993282mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:41993997..41994033mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:41994148..41994275mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:41994375..41994446mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:41997762..41997898mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:42022711..42022822mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:42037932..42038251mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:42038341..42038405mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:42050206..42050249mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:42050334..42050371mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:42050472..42050733mRNAPaHa01g21260.1
CDS
part_ofPaHa01g21260.1-CDS-1-1787993825:42059674..42059797mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:41965850..41965945mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:41993040..41993157mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:41993261..41993282mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:41993997..41994033mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:41994148..41994275mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:41994375..41994446mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:41997762..41997898mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:42022711..42022822mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:42037932..42038251mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:42038341..42038405mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:42050206..42050249mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:42050334..42050371mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:42050472..42050733mRNAPaHa01g21260.1
exon
part_ofPaHa01g21260.1-exon-1-1787993825:42059674..42059797mRNAPaHa01g21260.1
