PaHa01g06050.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,954: bp
1:7,905,345–7,919,594: genomic location

Record overview

Feature identity

Identifier: PaHa01g06050.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 3,954 bp
Genomic location: 1:7,905,345–7,919,594
Strand: +

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa01g06050

eggNOG: Preferred name: LOC103706709 | Seed ortholog: 337451.A0A443NK21 | COG: S | eggNOG OG: Ada3@131567|A-1
Gene Ontology: GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000123 histone acetyltransferase complex; GO:0000124 SAGA complex; GO:0000278 mitotic cell cycle; GO:0000791 euchromatin; GO:0001932 regulation of protein phosphorylation; GO:0003682 chromatin binding; GO:0003713 transcription coactivator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005700 polytene chromosome; GO:0005703 polytene chromosome puff; GO:0006282 regulation of DNA repair; GO:0006325 chromatin organization; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0008150 biological_process; GO:0010628 positive regulation of gene expression; GO:0016922 nuclear receptor binding; GO:0019904 protein domain specific binding; GO:0030520 estrogen receptor signaling pathway; GO:0031647 regulation of protein stability; GO:0033276 transcription factor TFTC complex; GO:0043484 regulation of RNA splicing; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0045893 positive regulation of DNA-templated transcription; GO:0045995 regulation of embryonic development; GO:0051302 regulation of cell division; GO:0051726 regulation of cell cycle; GO:0070775 H3 histone acetyltransferase complex; GO:0072686 mitotic spindle; GO:0090043 regulation of tubulin deacetylation; GO:0140671 ADA complex; GO:0140672 ATAC complex
KEGG: KO: K11315 | Pathway: 05165 | BRITE: 00001, 03021, 03036

Biological context