Feature identity
- Identifier
- PaHa01g06350.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 960 bp
- Genomic location
- 1:8,434,701–8,446,661
- Strand
- +
Hass · mRNA
PaHa01g06350.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 960
- bp
- 1:8,434,701–8,446,661
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g06350
- eggNOG
- Preferred name: LOC103706718 | Seed ortholog: 337451.A0A3S3MFI9 | COG: S | eggNOG OG: Myb_DNA-bind_4@131567|c-5, Myb_DNA-bind_4@2759|AT-7, Myb_DNA-bind_4@3193|wu-18, Myb_DNA-bind_4@35493|Px-14, Myb_DNA-bind_4@58023|AuT-22
- Gene Ontology
- GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0009738 abscisic acid-activated signaling pathway; GO:0009873 ethylene-activated signaling pathway; GO:0010468 regulation of gene expression; GO:0040029 epigenetic regulation of gene expression; GO:0042393 histone binding
- KEGG
- EC: ec:3.1.3.48 | KO: K18045 | Pathway: 05168 | BRITE: 00001, 01000, 01009
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g06350.1-protein
derives_frommRNAPaHa01g06350.1
mRNAPaHa01g06350.1
part_ofgenePaHa01g06350
CDS
part_ofPaHa01g06350.1-CDS-1-1787993825:8434701..8434750mRNAPaHa01g06350.1
CDS
part_ofPaHa01g06350.1-CDS-1-1787993825:8436387..8436468mRNAPaHa01g06350.1
CDS
part_ofPaHa01g06350.1-CDS-1-1787993825:8436590..8437403mRNAPaHa01g06350.1
CDS
part_ofPaHa01g06350.1-CDS-1-1787993825:8446648..8446661mRNAPaHa01g06350.1
exon
part_ofPaHa01g06350.1-exon-1-1787993825:8434701..8434750mRNAPaHa01g06350.1
exon
part_ofPaHa01g06350.1-exon-1-1787993825:8436387..8436468mRNAPaHa01g06350.1
exon
part_ofPaHa01g06350.1-exon-1-1787993825:8436590..8437403mRNAPaHa01g06350.1
exon
part_ofPaHa01g06350.1-exon-1-1787993825:8446648..8446661mRNAPaHa01g06350.1
