PaHa02g22520.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,644: bp
2:66,069,857–66,084,131: genomic location

Record overview

Feature identity

Identifier: PaHa02g22520.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 1,644 bp
Genomic location: 2:66,069,857–66,084,131
Strand: −

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa02g22520

eggNOG: Preferred name: LOC104592205 | Seed ortholog: 337451.A0A443N4D3 | COG: S | eggNOG OG: FKBP_C@131567|Oe-14, FKBP_C@2759|AAG-21!, FKBP_C@3398|HOQ-32
Gene Ontology: GO:0000747 conjugation with cellular fusion; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003674 molecular_function; GO:0003723 RNA binding; GO:0003755 peptidyl-prolyl cis-trans isomerase activity; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005525 GTP binding; GO:0005527 macrolide binding; GO:0005528 FK506 binding; GO:0005575 cellular_component; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006325 chromatin organization; GO:0006366 transcription by RNA polymerase II; GO:0006457 protein folding; GO:0006463 steroid hormone receptor complex assembly; GO:0006825 copper ion transport; GO:0007566 embryo implantation; GO:0009408 response to heat; GO:0009617 response to bacterium; GO:0010880 regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum; GO:0010977 negative regulation of neuron projection development; GO:0014802 terminal cisterna; GO:0016020 membrane; GO:0016027 inaD signaling complex; GO:0030521 androgen receptor signaling pathway; GO:0030674 protein-macromolecule adaptor activity; GO:0030850 prostate gland development; GO:0031072 heat shock protein binding; GO:0031111 negative regulation of microtubule polymerization or depolymerization; GO:0031115 negative regulation of microtubule polymerization; GO:0031503 protein-containing complex localization; GO:0031929 TOR signaling; GO:0032767 copper-dependent protein binding; GO:0032991 protein-containing complex; GO:0034713 type I transforming growth factor beta receptor binding; GO:0035259 nuclear glucocorticoid receptor binding; GO:0042220 response to cocaine; GO:0043025 neuronal cell body; GO:0043491 phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0044183 protein folding chaperone; GO:0044295 axonal growth cone; GO:0046661 male sex differentiation; GO:0048156 tau protein binding; GO:0048471 perinuclear region of cytoplasm; GO:0048608 reproductive structure development; GO:0050908 detection of light stimulus involved in visual perception; GO:0051219 phosphoprotein binding; GO:0051879 Hsp90 protein binding; GO:0051898 negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0051924 regulation of calcium ion transport; GO:0062040 fungal biofilm matrix; GO:0070062 extracellular exosome; GO:0070651 nonfunctional rRNA decay; GO:0071466 cellular response to xenobiotic stimulus; GO:0097305 response to alcohol; GO:1901096 regulation of autophagosome maturation; GO:1901710 regulation of homoserine biosynthetic process; GO:1901711 negative regulation of homoserine biosynthetic process; GO:1903332 regulation of protein folding
KEGG: EC: ec:5.2.1.8 | KO: K09571 | Pathway: 00100, 01100, 01110, 03015, 04915 | Module: M00101, M00917 | BRITE: 00001, 01000, 03110

Biological context