Feature identity
- Identifier
- PaHa02g25380.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,752 bp
- Genomic location
- 2:72,364,981–72,385,240
- Strand
- −
Hass · mRNA
PaHa02g25380.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,752
- bp
- 2:72,364,981–72,385,240
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g25380
- eggNOG
- Preferred name: HSF30 | Seed ortholog: 337451.A0A443N564 | COG: S | eggNOG OG: HSF_DNA-bind@131567|Dp-10, HSF_DNA-bind@3193|AWe-23, HSF_DNA-bind@33090|fZ-18, HSF_DNA-bind@3398|CFa-30, HSF_DNA-bind@35493|uY-20
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0001666 response to hypoxia; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009408 response to heat; GO:0010286 heat acclimation; GO:0034605 cellular response to heat; GO:0034620 cellular response to unfolded protein; GO:0042542 response to hydrogen peroxide; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription; GO:0071456 cellular response to hypoxia; GO:1990841 promoter-specific chromatin binding
- KEGG
- KO: K09419 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g25380.1-protein
derives_frommRNAPaHa02g25380.1
mRNAPaHa02g25380.1
part_ofgenePaHa02g25380
CDS
part_ofPaHa02g25380.1-CDS-2-1787993825:72364981..72365254mRNAPaHa02g25380.1
CDS
part_ofPaHa02g25380.1-CDS-2-1787993825:72365584..72366401mRNAPaHa02g25380.1
CDS
part_ofPaHa02g25380.1-CDS-2-1787993825:72367503..72367793mRNAPaHa02g25380.1
CDS
part_ofPaHa02g25380.1-CDS-2-1787993825:72367882..72367915mRNAPaHa02g25380.1
CDS
part_ofPaHa02g25380.1-CDS-2-1787993825:72377882..72377966mRNAPaHa02g25380.1
CDS
part_ofPaHa02g25380.1-CDS-2-1787993825:72384991..72385240mRNAPaHa02g25380.1
exon
part_ofPaHa02g25380.1-exon-2-1787993825:72364981..72365254mRNAPaHa02g25380.1
exon
part_ofPaHa02g25380.1-exon-2-1787993825:72365584..72366401mRNAPaHa02g25380.1
exon
part_ofPaHa02g25380.1-exon-2-1787993825:72367503..72367793mRNAPaHa02g25380.1
exon
part_ofPaHa02g25380.1-exon-2-1787993825:72367882..72367915mRNAPaHa02g25380.1
exon
part_ofPaHa02g25380.1-exon-2-1787993825:72377882..72377966mRNAPaHa02g25380.1
exon
part_ofPaHa02g25380.1-exon-2-1787993825:72384991..72385240mRNAPaHa02g25380.1
