Feature identity
- Identifier
- PaHa01g07960.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,569 bp
- Genomic location
- 1:11,200,918–11,214,249
- Strand
- −
Hass · mRNA
PaHa01g07960.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,569
- bp
- 1:11,200,918–11,214,249
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g07960
- eggNOG
- Preferred name: LOC100382023 | Seed ortholog: 337451.A0A3S3Q5F4 | COG: S | eggNOG OG: B3@131567|A-1*, B3@3193|BDa-24, B3@33090|AIL-20, B3@3398|CID-29, zf-CW@131567|c-5, zf-CW@2759|BY-9, zf-CW@3193|Oq-17, zf-CW@33090|JX-15, zf-CW@3398|Vv-19
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005739 mitochondrion; GO:0006355 regulation of DNA-templated transcription; GO:0009737 response to abscisic acid; GO:0009744 response to sucrose; GO:0045892 negative regulation of DNA-templated transcription
- KEGG
- KO: K09287 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g07960.1-protein
derives_frommRNAPaHa01g07960.1
mRNAPaHa01g07960.1
part_ofgenePaHa01g07960
CDS
part_ofPaHa01g07960.1-CDS-1-1787993825:11200918..11201690mRNAPaHa01g07960.1
CDS
part_ofPaHa01g07960.1-CDS-1-1787993825:11205051..11205118mRNAPaHa01g07960.1
CDS
part_ofPaHa01g07960.1-CDS-1-1787993825:11206120..11206233mRNAPaHa01g07960.1
CDS
part_ofPaHa01g07960.1-CDS-1-1787993825:11207912..11207961mRNAPaHa01g07960.1
CDS
part_ofPaHa01g07960.1-CDS-1-1787993825:11210394..11210816mRNAPaHa01g07960.1
CDS
part_ofPaHa01g07960.1-CDS-1-1787993825:11211457..11211533mRNAPaHa01g07960.1
CDS
part_ofPaHa01g07960.1-CDS-1-1787993825:11214186..11214249mRNAPaHa01g07960.1
exon
part_ofPaHa01g07960.1-exon-1-1787993825:11200918..11201690mRNAPaHa01g07960.1
exon
part_ofPaHa01g07960.1-exon-1-1787993825:11205051..11205118mRNAPaHa01g07960.1
exon
part_ofPaHa01g07960.1-exon-1-1787993825:11206120..11206233mRNAPaHa01g07960.1
exon
part_ofPaHa01g07960.1-exon-1-1787993825:11207912..11207961mRNAPaHa01g07960.1
exon
part_ofPaHa01g07960.1-exon-1-1787993825:11210394..11210816mRNAPaHa01g07960.1
exon
part_ofPaHa01g07960.1-exon-1-1787993825:11211457..11211533mRNAPaHa01g07960.1
exon
part_ofPaHa01g07960.1-exon-1-1787993825:11214186..11214249mRNAPaHa01g07960.1
