PaHa02g40170.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

4,245: bp
2:96,190,156–96,199,367: genomic location

Record overview

Feature identity

Identifier: PaHa02g40170.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 4,245 bp
Genomic location: 2:96,190,156–96,199,367
Strand: +

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa02g40170

eggNOG: Preferred name: RGA3 | Seed ortholog: 337451.A0A443N8J4 | COG: COG5635 | eggNOG OG: NB-ARC@131567|AC-6, NB-ARC@1437183|OwQ-46, NB-ARC@3193|Cnn-30, NB-ARC@35493|Aho-23, Rx_N@131567|O-4, Rx_N@1437183|uZ-15
Gene Ontology: GO:0000139 Golgi membrane; GO:0000166 nucleotide binding; GO:0000325 plant-type vacuole; GO:0002229 defense response to oomycetes; GO:0002239 response to oomycetes; GO:0002758 innate immune response-activating signaling pathway; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005789 endoplasmic reticulum membrane; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006952 defense response; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009416 response to light stimulus; GO:0009506 plasmodesma; GO:0009507 chloroplast; GO:0009615 response to virus; GO:0009626 plant-type hypersensitive response; GO:0009733 response to auxin; GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0009941 chloroplast envelope; GO:0010082 regulation of root meristem growth; GO:0010114 response to red light; GO:0010193 response to ozone; GO:0012505 endomembrane system; GO:0016020 membrane; GO:0016301 kinase activity; GO:0030275 LRR domain binding; GO:0034052 positive regulation of plant-type hypersensitive response; GO:0034644 cellular response to UV; GO:0042742 defense response to bacterium; GO:0042802 identical protein binding; GO:0045088 regulation of innate immune response; GO:0046713 borate transport; GO:0048046 apoplast; GO:0050832 defense response to fungus; GO:0051607 defense response to virus; GO:0051707 response to other organism; GO:0071456 cellular response to hypoxia; GO:0140376 innate immune receptor activity; GO:2000071 regulation of defense response by callose deposition
KEGG: EC: ec:3.1.3.16 | KO: K14497, K16225, K16226 | Pathway: 04016, 04075, 04626 | BRITE: 00001, 01000

Biological context