Feature identity
- Identifier
- PaHa03g01400.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,185 bp
- Genomic location
- 3:3,814,549–3,818,286
- Strand
- +
Hass · mRNA
PaHa03g01400.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,185
- bp
- 3:3,814,549–3,818,286
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g01400
- eggNOG
- Preferred name: REIL1 | Seed ortholog: 337451.A0A443N9W8 | COG: S | eggNOG OG: zf-C2H2_2@131567|A-1*, zf-C2H2_2@2759|Bg-11
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006355 regulation of DNA-templated transcription; GO:0006364 rRNA processing; GO:0009631 cold acclimation; GO:0042273 ribosomal large subunit biogenesis; GO:0090070 positive regulation of ribosome biogenesis
- KEGG
- EC: ec:2.1.1.319 | KO: K14816 | Pathway: 03040, 04391 | BRITE: 00001, 03009
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g01400.1-protein
derives_frommRNAPaHa03g01400.1
mRNAPaHa03g01400.1
part_ofgenePaHa03g01400
CDS
part_ofPaHa03g01400.1-CDS-3-1787993825:3814549..3814584mRNAPaHa03g01400.1
CDS
part_ofPaHa03g01400.1-CDS-3-1787993825:3815866..3816453mRNAPaHa03g01400.1
CDS
part_ofPaHa03g01400.1-CDS-3-1787993825:3816914..3817098mRNAPaHa03g01400.1
CDS
part_ofPaHa03g01400.1-CDS-3-1787993825:3817342..3817557mRNAPaHa03g01400.1
CDS
part_ofPaHa03g01400.1-CDS-3-1787993825:3818127..3818286mRNAPaHa03g01400.1
exon
part_ofPaHa03g01400.1-exon-3-1787993825:3814549..3814584mRNAPaHa03g01400.1
exon
part_ofPaHa03g01400.1-exon-3-1787993825:3815866..3816453mRNAPaHa03g01400.1
exon
part_ofPaHa03g01400.1-exon-3-1787993825:3816914..3817098mRNAPaHa03g01400.1
exon
part_ofPaHa03g01400.1-exon-3-1787993825:3817342..3817557mRNAPaHa03g01400.1
exon
part_ofPaHa03g01400.1-exon-3-1787993825:3818127..3818286mRNAPaHa03g01400.1
