Hass · gene

PaHa03g00600

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

693
bp
3:2,512,153–2,512,845
genomic location
Record overview

Feature identity

Identifier
PaHa03g00600
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
693 bp
Genomic location
3:2,512,153–2,512,845
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: COL2 | Seed ortholog: 4432.A0A1U8AZA9 | COG: S | eggNOG OG: zf-B_box@2759|B-2!, zf-B_box@3193|BZ-10
Gene Ontology
GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003712 transcription coregulator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0007623 circadian rhythm; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0009408 response to heat; GO:0009416 response to light stimulus; GO:0009637 response to blue light; GO:0009640 photomorphogenesis; GO:0009641 shade avoidance; GO:0009658 chloroplast organization; GO:0009718 anthocyanin-containing compound biosynthetic process; GO:0009741 response to brassinosteroid; GO:0009908 flower development; GO:0009909 regulation of flower development; GO:0010018 far-red light signaling pathway; GO:0010099 regulation of photomorphogenesis; GO:0010100 negative regulation of photomorphogenesis; GO:0010114 response to red light; GO:0010117 photoprotection; GO:0010161 red light signaling pathway; GO:0010218 response to far red light; GO:0010223 secondary shoot formation; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0015995 chlorophyll biosynthetic process; GO:0016607 nuclear speck; GO:0032922 circadian regulation of gene expression; GO:0042802 identical protein binding; GO:0043565 sequence-specific DNA binding; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0048571 long-day photoperiodism; GO:0048572 short-day photoperiodism; GO:0048573 photoperiodism, flowering; GO:0048576 positive regulation of short-day photoperiodism, flowering; GO:0048577 negative regulation of short-day photoperiodism, flowering; GO:0048579 negative regulation of long-day photoperiodism, flowering; GO:0070370 cellular heat acclimation; GO:0071483 cellular response to blue light; GO:0090351 seedling development; GO:1900458 negative regulation of brassinosteroid mediated signaling pathway; GO:1902448 positive regulation of shade avoidance; GO:1905157 positive regulation of photosynthesis; GO:2000306 positive regulation of photomorphogenesis
KEGG
KO: K12135 | Pathway: 04712 | BRITE: 00001
Biological context

Connected feature records

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