Hass · gene

PaHa03g03390

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,613
bp
3:7,063,106–7,076,933
genomic location
Record overview

Feature identity

Identifier
PaHa03g03390
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,613 bp
Genomic location
3:7,063,106–7,076,933
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: BnaA04g14170D | Seed ortholog: 337451.A0A3S3MV88 | COG: S | eggNOG OG: LRR_1@131567|AkJ-19, LRR_1@1437183|Hgq-31, LRR_1@2759|BDd-20, LRR_1@3193|EIm-26, LRR_1@33090|CwW-24, LRR_6@131567|nU-18, LRR_6@2759|we-19, LRR_6@3193|Flv-30, LRR_6@35493|DRA-27, LRR_8@131567|gj-23, LRR_8@2759|BDN-29, LRR_8@3193|FcU-35, PK_Tyr_Ser-Thr@131567|TO-14, PK_Tyr_Ser-Thr@3193|HMl-33, PK_Tyr_Ser-Thr@35493|DRm-27, PK_Tyr_Ser-Thr@58023|JCC-35
Gene Ontology
GO:0000302 response to reactive oxygen species; GO:0000325 plant-type vacuole; GO:0001932 regulation of protein phosphorylation; GO:0002221 pattern recognition receptor signaling pathway; GO:0002224 toll-like receptor signaling pathway; GO:0002229 defense response to oomycetes; GO:0002237 response to molecule of bacterial origin; GO:0002238 response to molecule of fungal origin; GO:0002446 neutrophil mediated immunity; GO:0002667 regulation of T cell anergy; GO:0002752 cell surface pattern recognition receptor signaling pathway; GO:0002755 MyD88-dependent toll-like receptor signaling pathway; GO:0002758 innate immune response-activating signaling pathway; GO:0005515 protein binding; GO:0005886 plasma membrane; GO:0006468 protein phosphorylation; GO:0006470 protein dephosphorylation; GO:0006952 defense response; GO:0006954 inflammatory response; GO:0006955 immune response; GO:0006968 cellular defense response; GO:0006979 response to oxidative stress; GO:0007165 signal transduction; GO:0007166 cell surface receptor signaling pathway; GO:0007249 canonical NF-kappaB signal transduction; GO:0007623 circadian rhythm; GO:0007639 homeostasis of number of meristem cells; GO:0008150 biological_process; GO:0009101 glycoprotein biosynthetic process; GO:0009266 response to temperature stimulus; GO:0009311 oligosaccharide metabolic process; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009416 response to light stimulus; GO:0009555 pollen development; GO:0009556 microsporogenesis; GO:0009609 response to symbiotic bacterium; GO:0009611 response to wounding; GO:0009615 response to virus; GO:0009617 response to bacterium; GO:0009620 response to fungus; GO:0009626 plant-type hypersensitive response; GO:0009631 cold acclimation; GO:0009649 entrainment of circadian clock; GO:0009651 response to salt stress; GO:0009658 chloroplast organization; GO:0009664 plant-type cell wall organization; GO:0009723 response to ethylene; GO:0009734 auxin-activated signaling pathway; GO:0009737 response to abscisic acid; GO:0009738 abscisic acid-activated signaling pathway; GO:0009741 response to brassinosteroid; GO:0009742 brassinosteroid mediated signaling pathway; GO:0009745 sucrose mediated signaling; GO:0009751 response to salicylic acid; GO:0009788 negative regulation of abscisic acid-activated signaling pathway; GO:0009789 positive regulation of abscisic acid-activated signaling pathway; GO:0009791 post-embryonic development; GO:0009793 embryo development ending in seed dormancy; GO:0009808 lignin metabolic process; GO:0009826 unidimensional cell growth; GO:0009832 plant-type cell wall biogenesis; GO:0009838 abscission; GO:0009846 pollen germination; GO:0009860 pollen tube growth; GO:0009861 jasmonic acid and ethylene-dependent systemic resistance; GO:0009877 nodulation; GO:0009942 longitudinal axis specification; GO:0009945 radial axis specification; GO:0009960 endosperm development; GO:0009992 intracellular water homeostasis; GO:0010038 response to metal ion; GO:0010068 protoderm histogenesis; GO:0010073 meristem maintenance; GO:0010078 maintenance of root meristem identity; GO:0010088 phloem development; GO:0010098 suspensor development; GO:0010118 stomatal movement; GO:0010119 regulation of stomatal movement; GO:0010150 leaf senescence; GO:0010152 pollen maturation; GO:0010183 pollen tube guidance; GO:0010192 mucilage biosynthetic process; GO:0010200 response to chitin; GO:0010262 somatic embryogenesis; GO:0010375 stomatal complex patterning; GO:0010483 pollen tube reception; GO:0010492 maintenance of shoot apical meristem identity; GO:0010600 regulation of auxin biosynthetic process; GO:0010928 regulation of auxin mediated signaling pathway; GO:0012501 programmed cell death; GO:0014005 microglia development; GO:0016567 protein ubiquitination; GO:0021766 hippocampus development; GO:0022898 regulation of transmembrane transporter activity; GO:0030308 negative regulation of cell growth; GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway; GO:0031348 negative regulation of defense response; GO:0031349 positive regulation of defense response; GO:0031663 lipopolysaccharide-mediated signaling pathway; GO:0031667 response to nutrient levels; GO:0032491 detection of molecule of fungal origin; GO:0032497 detection of lipopolysaccharide; GO:0032499 detection of peptidoglycan; GO:0032502 developmental process; GO:0032922 circadian regulation of gene expression; GO:0034142 toll-like receptor 4 signaling pathway; GO:0034162 toll-like receptor 9 signaling pathway; GO:0034504 protein localization to nucleus; GO:0035556 intracellular signal transduction; GO:0038172 interleukin-33-mediated signaling pathway; GO:0040008 regulation of growth; GO:0040015 negative regulation of multicellular organism growth; GO:0042542 response to hydrogen peroxide; GO:0042631 cellular response to water deprivation; GO:0042742 defense response to bacterium; GO:0042981 regulation of apoptotic process; GO:0043068 positive regulation of programmed cell death; GO:0043123 positive regulation of canonical NF-kappaB signal transduction; GO:0043405 regulation of MAP kinase activity; GO:0043408 regulation of MAPK cascade; GO:0043491 phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0044546 NLRP3 inflammasome complex assembly; GO:0045087 innate immune response; GO:0045088 regulation of innate immune response; GO:0045089 positive regulation of innate immune response; GO:0045893 positive regulation of DNA-templated transcription; GO:0046328 regulation of JNK cascade; GO:0046777 protein autophosphorylation; GO:0048354 mucilage biosynthetic process involved in seed coat development; GO:0048364 root development; GO:0048439 flower morphogenesis; GO:0048508 embryonic meristem development; GO:0048527 lateral root development; GO:0048573 photoperiodism, flowering; GO:0048653 anther development; GO:0048768 root hair cell tip growth; GO:0050777 negative regulation of immune response; GO:0050832 defense response to fungus; GO:0051607 defense response to virus; GO:0051897 positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0051898 negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0051924 regulation of calcium ion transport; GO:0052542 defense response by callose deposition; GO:0052543 callose deposition in cell wall; GO:0060586 multicellular organismal-level iron ion homeostasis; GO:0060862 negative regulation of floral organ abscission; GO:0062207 regulation of pattern recognition receptor signaling pathway; GO:0070498 interleukin-1-mediated signaling pathway; GO:0071215 cellular response to abscisic acid stimulus; GO:0071219 cellular response to molecule of bacterial origin; GO:0071244 cellular response to carbon dioxide; GO:0071323 cellular response to chitin; GO:0071446 cellular response to salicylic acid stimulus; GO:0071456 cellular response to hypoxia; GO:0071485 cellular response to absence of light; GO:0080092 regulation of pollen tube growth; GO:0080136 priming of cellular response to stress; GO:0080141 regulation of jasmonic acid biosynthetic process; GO:0080142 regulation of salicylic acid biosynthetic process; GO:0080147 root hair cell development; GO:0080159 zygote elongation; GO:0090333 regulation of stomatal closure; GO:0090558 plant epidermis development; GO:0090627 plant epidermal cell differentiation; GO:0097275 intracellular ammonium homeostasis; GO:0099402 plant organ development; GO:0140301 pollen-stigma interaction; GO:0140374 antiviral innate immune response; GO:1900055 regulation of leaf senescence; GO:1900150 regulation of defense response to fungus; GO:1900424 regulation of defense response to bacterium; GO:1900426 positive regulation of defense response to bacterium; GO:1900459 positive regulation of brassinosteroid mediated signaling pathway; GO:1900744 regulation of p38MAPK cascade; GO:1901141 regulation of lignin biosynthetic process; GO:1901653 cellular response to peptide; GO:1902290 positive regulation of defense response to oomycetes; GO:1902458 positive regulation of stomatal opening; GO:1902532 negative regulation of intracellular signal transduction; GO:1902533 positive regulation of intracellular signal transduction; GO:1902584 positive regulation of response to water deprivation; GO:1903428 positive regulation of reactive oxygen species biosynthetic process; GO:1905393 plant organ formation; GO:1990266 neutrophil migration; GO:2000037 regulation of stomatal complex patterning; GO:2000038 regulation of stomatal complex development; GO:2000280 regulation of root development; GO:2000377 regulation of reactive oxygen species metabolic process; GO:2000605 positive regulation of secondary growth
KEGG
EC: ec:2.7.11.1 | KO: K00924 | Pathway: 04075 | BRITE: 00001, 01000, 01001 | CAZy: CBM57|Carbohydrate-Binding Module Family 57.
Biological context

Connected feature records

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