Hass · gene

PaHa03g05360

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,459
bp
3:10,524,257–10,538,871
genomic location
Record overview

Feature identity

Identifier
PaHa03g05360
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,459 bp
Genomic location
3:10,524,257–10,538,871
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: Rif1 | Seed ortholog: 337451.A0A3S3MFY3 | COG: S | eggNOG OG: Rif1_N@2759|A-1
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000723 telomere maintenance; GO:0000729 DNA double-strand break processing; GO:0000781 chromosome, telomeric region; GO:0000785 chromatin; GO:0000792 heterochromatin; GO:0000793 condensed chromosome; GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding; GO:0001700 embryonic development via the syncytial blastoderm; GO:0001939 female pronucleus; GO:0001940 male pronucleus; GO:0003674 molecular_function; GO:0003688 DNA replication origin binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005730 nucleolus; GO:0005886 plasma membrane; GO:0006270 DNA replication initiation; GO:0006974 DNA damage response; GO:0008150 biological_process; GO:0010369 chromocenter; GO:0016233 telomere capping; GO:0019237 centromeric DNA binding; GO:0019827 stem cell population maintenance; GO:0030174 regulation of DNA-templated DNA replication initiation; GO:0030466 silent mating-type cassette heterochromatin formation; GO:0031509 subtelomeric heterochromatin formation; GO:0031965 nuclear membrane; GO:0032297 negative regulation of DNA-templated DNA replication initiation; GO:0035861 site of double-strand break; GO:0042162 telomeric repeat DNA binding; GO:0043247 telomere maintenance in response to DNA damage; GO:0043596 nuclear replication fork; GO:0044011 single-species biofilm formation on inanimate substrate; GO:0045814 negative regulation of gene expression, epigenetic; GO:0045830 positive regulation of isotype switching; GO:0051233 spindle midzone; GO:0051880 G-quadruplex DNA binding; GO:0070187 shelterin complex; GO:0070198 protein localization to chromosome, telomeric region; GO:0071807 replication fork arrest involved in DNA replication termination; GO:0097752 regulation of DNA stability; GO:0101018 negative regulation of mitotic DNA replication initiation from late origin; GO:0140445 chromosome, telomeric repeat region; GO:0140463 chromatin-protein adaptor activity; GO:1901991 negative regulation of mitotic cell cycle phase transition; GO:1990830 cellular response to leukemia inhibitory factor; GO:2000042 negative regulation of double-strand break repair via homologous recombination; GO:2000104 negative regulation of DNA-templated DNA replication; GO:2001034 positive regulation of double-strand break repair via nonhomologous end joining
KEGG
KO: K11138 | Pathway: 04550 | BRITE: 00001, 03032
Biological context

Connected feature records

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