Feature identity
- Identifier
- PaHa03g02790.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,749 bp
- Genomic location
- 3:6,149,561–6,153,783
- Strand
- +
Hass · mRNA
PaHa03g02790.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,749
- bp
- 3:6,149,561–6,153,783
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g02790
- eggNOG
- Preferred name: 11437324 | Seed ortholog: 337451.A0A443NA58 | COG: S | eggNOG OG: Homeodomain@131567|Fe-12, Homeodomain@3193|EBq-28, Homeodomain@3398|Hxb-32, Homeodomain@35493|DQH-27, START@131567|e-5, START@2759|CM-9!, START@3398|tU-19!, START@35493|eI-17
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009845 seed germination; GO:0010029 regulation of seed germination; GO:0010090 trichome morphogenesis; GO:0010214 seed coat development; GO:0030154 cell differentiation; GO:0043565 sequence-specific DNA binding; GO:0048354 mucilage biosynthetic process involved in seed coat development; GO:0048497 maintenance of floral organ identity; GO:0048825 cotyledon development; GO:0052541 plant-type cell wall cellulose metabolic process; GO:0090627 plant epidermal cell differentiation; GO:2000033 regulation of seed dormancy process; GO:2000144 positive regulation of DNA-templated transcription initiation
- KEGG
- KO: K09338 | Pathway: 04814 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g02790.1-protein
derives_frommRNAPaHa03g02790.1
mRNAPaHa03g02790.1
part_ofgenePaHa03g02790
CDS
part_ofPaHa03g02790.1-CDS-3-1787993825:6149561..6149769mRNAPaHa03g02790.1
CDS
part_ofPaHa03g02790.1-CDS-3-1787993825:6149932..6150049mRNAPaHa03g02790.1
CDS
part_ofPaHa03g02790.1-CDS-3-1787993825:6151107..6151295mRNAPaHa03g02790.1
CDS
part_ofPaHa03g02790.1-CDS-3-1787993825:6151378..6151818mRNAPaHa03g02790.1
CDS
part_ofPaHa03g02790.1-CDS-3-1787993825:6151903..6152004mRNAPaHa03g02790.1
CDS
part_ofPaHa03g02790.1-CDS-3-1787993825:6152540..6152740mRNAPaHa03g02790.1
CDS
part_ofPaHa03g02790.1-CDS-3-1787993825:6152832..6153003mRNAPaHa03g02790.1
CDS
part_ofPaHa03g02790.1-CDS-3-1787993825:6153359..6153448mRNAPaHa03g02790.1
CDS
part_ofPaHa03g02790.1-CDS-3-1787993825:6153557..6153783mRNAPaHa03g02790.1
exon
part_ofPaHa03g02790.1-exon-3-1787993825:6149561..6149769mRNAPaHa03g02790.1
exon
part_ofPaHa03g02790.1-exon-3-1787993825:6149932..6150049mRNAPaHa03g02790.1
exon
part_ofPaHa03g02790.1-exon-3-1787993825:6151107..6151295mRNAPaHa03g02790.1
exon
part_ofPaHa03g02790.1-exon-3-1787993825:6151378..6151818mRNAPaHa03g02790.1
exon
part_ofPaHa03g02790.1-exon-3-1787993825:6151903..6152004mRNAPaHa03g02790.1
exon
part_ofPaHa03g02790.1-exon-3-1787993825:6152540..6152740mRNAPaHa03g02790.1
exon
part_ofPaHa03g02790.1-exon-3-1787993825:6152832..6153003mRNAPaHa03g02790.1
exon
part_ofPaHa03g02790.1-exon-3-1787993825:6153359..6153448mRNAPaHa03g02790.1
exon
part_ofPaHa03g02790.1-exon-3-1787993825:6153557..6153783mRNAPaHa03g02790.1
