Feature identity
- Identifier
- PaHa01g08930.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 852 bp
- Genomic location
- 1:12,918,011–12,930,780
- Strand
- +
Hass · mRNA
PaHa01g08930.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 852
- bp
- 1:12,918,011–12,930,780
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g08930
- eggNOG
- Preferred name: LOC103712985 | Seed ortholog: 337451.A0A443NKU2 | COG: S | eggNOG OG: eIF3_subunit@2759|A-1, eIF3_subunit@3398|GT-12
- Gene Ontology
- GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0001732 formation of cytoplasmic translation initiation complex; GO:0002181 cytoplasmic translation; GO:0003674 molecular_function; GO:0003743 translation initiation factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005852 eukaryotic translation initiation factor 3 complex; GO:0006413 translational initiation; GO:0006446 regulation of translational initiation; GO:0008150 biological_process; GO:0010494 cytoplasmic stress granule; GO:0042802 identical protein binding
- KEGG
- KO: K03245 | BRITE: 00001, 03009, 03012
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g08930.1-protein
derives_frommRNAPaHa01g08930.1
mRNAPaHa01g08930.1
part_ofgenePaHa01g08930
CDS
part_ofPaHa01g08930.1-CDS-1-1787993825:12918011..12918023mRNAPaHa01g08930.1
CDS
part_ofPaHa01g08930.1-CDS-1-1787993825:12921330..12921460mRNAPaHa01g08930.1
CDS
part_ofPaHa01g08930.1-CDS-1-1787993825:12923664..12923815mRNAPaHa01g08930.1
CDS
part_ofPaHa01g08930.1-CDS-1-1787993825:12929378..12929525mRNAPaHa01g08930.1
CDS
part_ofPaHa01g08930.1-CDS-1-1787993825:12929626..12929785mRNAPaHa01g08930.1
CDS
part_ofPaHa01g08930.1-CDS-1-1787993825:12929905..12929989mRNAPaHa01g08930.1
CDS
part_ofPaHa01g08930.1-CDS-1-1787993825:12930462..12930556mRNAPaHa01g08930.1
CDS
part_ofPaHa01g08930.1-CDS-1-1787993825:12930713..12930780mRNAPaHa01g08930.1
exon
part_ofPaHa01g08930.1-exon-1-1787993825:12918011..12918023mRNAPaHa01g08930.1
exon
part_ofPaHa01g08930.1-exon-1-1787993825:12921330..12921460mRNAPaHa01g08930.1
exon
part_ofPaHa01g08930.1-exon-1-1787993825:12923664..12923815mRNAPaHa01g08930.1
exon
part_ofPaHa01g08930.1-exon-1-1787993825:12929378..12929525mRNAPaHa01g08930.1
exon
part_ofPaHa01g08930.1-exon-1-1787993825:12929626..12929785mRNAPaHa01g08930.1
exon
part_ofPaHa01g08930.1-exon-1-1787993825:12929905..12929989mRNAPaHa01g08930.1
exon
part_ofPaHa01g08930.1-exon-1-1787993825:12930462..12930556mRNAPaHa01g08930.1
exon
part_ofPaHa01g08930.1-exon-1-1787993825:12930713..12930780mRNAPaHa01g08930.1
